View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_444 (Length: 230)
Name: NF7829A_low_444
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_444 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 32853659 - 32853431
Alignment:
| Q |
1 |
atgcaaataagttattctctactatgattaatgatnnnnnnntctggtgagatatggtttttagatagtggctgtagcaatcatgtaacagggaatcaaa |
100 |
Q |
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| T |
32853659 |
atgcaaataagttattctctactatgattaatgatcaaaaa-tctggtgagatgtggtttttagatagtggctgcagcaatcatgtaacagggaatcaaa |
32853561 |
T |
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| Q |
101 |
ccatatttaaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatac |
200 |
Q |
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| T |
32853560 |
ccatatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatac |
32853461 |
T |
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| Q |
201 |
tagtcaaggcaacaaacaattcattcatga |
230 |
Q |
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| T |
32853460 |
tagtcaaggcaacaaacaattcattcatga |
32853431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 37176795 - 37176567
Alignment:
| Q |
1 |
atgcaaataagttattctctactatgattaatgatnnnnnnntctggtgagatatggtttttagatagtggctgtagcaatcatgtaacagggaatcaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37176795 |
atgcaaataagttattctctactatgattaatgataaaaaa-tctggtgagatgtggtttttagatagtggttgtagcaatcatgtaacagggaatcaaa |
37176697 |
T |
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| Q |
101 |
ccatatttaaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatac |
200 |
Q |
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| T |
37176696 |
ccatatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacatgttaaaattgaaggaaagggggttatagcagttcatac |
37176597 |
T |
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| Q |
201 |
tagtcaaggcaacaaacaattcattcatga |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
37176596 |
tagtcaaggcaacaaacaattcattcatga |
37176567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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