View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_449 (Length: 230)
Name: NF7829A_low_449
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_449 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 420073 - 420001
Alignment:
| Q |
1 |
agggtactacaaaaggaaattgatcaaggattattaataaagactaaaattgattcttcctgggtcgatgccc |
73 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
420073 |
agggtactacaaaaggaaattgatcaaggattatcaataaagactaaaattgattcttcctgggtcgatgccc |
420001 |
T |
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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 12088610 - 12088538
Alignment:
| Q |
1 |
agggtactacaaaaggaaattgatcaaggattattaataaagactaaaattgattcttcctgggtcgatgccc |
73 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12088610 |
agggtactacaaaaggaaattgatcaaggattatcaataaagactaaaattgattcttcctgggtcgatgccc |
12088538 |
T |
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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 43288179 - 43288265
Alignment:
| Q |
144 |
taaggatttaatcgatgattttttgtgcctaattaggatatctatcaccgtaattcaattttggtgaaaggttaagaaacttaatga |
230 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| |
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| T |
43288179 |
taaggatttatttgatgattttttgtgcctaattaggatatctatccccgtaattcagttttggtgaaaggttaagaaatttaatga |
43288265 |
T |
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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 36331910 - 36331839
Alignment:
| Q |
1 |
agggtactacaaaaggaaattgatcaaggattattaataaagactaaaattgattcttcctgggtcgatgcc |
72 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36331910 |
agggtactacaaaaggaaattgatcaaggattatcaataaagactaaaattgattcttcctgggtcgatgcc |
36331839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 40351944 - 40351872
Alignment:
| Q |
1 |
agggtactacaaaaggaaattgatcaaggattattaataaagactaaaattgattcttcctgggtcgatgccc |
73 |
Q |
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||||||||| |||||||||||||||| | ||||| |||||||||||||||||||||| | |||||| ||||| |
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| T |
40351944 |
agggtactagaaaaggaaattgatcaggtattatccataaagactaaaattgattctttccgggtcgttgccc |
40351872 |
T |
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