View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_454 (Length: 229)
Name: NF7829A_low_454
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_454 |
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Alignment Details
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 86 - 228
Target Start/End: Complemental strand, 28136752 - 28136613
Alignment:
| Q |
86 |
aatcatgttcatacattactactttttggtaatattaattttt-gtgtatacgaaaccctaaccctactcaatcagctttttcttcgagnnnnnnnnnnn |
184 |
Q |
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| T |
28136752 |
aatcatgttcatacattactactttttggtaatattaattttttgtgtatacgaaaccctaaccctactcaatcagctttttcttcgag----ctctctc |
28136657 |
T |
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| Q |
185 |
nnnnattcatggctacgacgttggtcagctcagccggtggcatg |
228 |
Q |
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| T |
28136656 |
tctcattcatggctacgacgttggtcagctcagccggtggcatg |
28136613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28136809 - 28136756
Alignment:
| Q |
1 |
agcttcatcatctccaattcttggtgagtcatattctctattcaatcttacttt |
54 |
Q |
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| T |
28136809 |
agcttcatcatctccaattcttggtgagtcatcttctctattcaatcttacttt |
28136756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 44805888 - 44805921
Alignment:
| Q |
191 |
tcatggctacgacgttggtcagctcagccggtgg |
224 |
Q |
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| T |
44805888 |
tcatggctacgacgttggtcagctcagccggtgg |
44805921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 2230342 - 2230378
Alignment:
| Q |
192 |
catggctacgacgttggtcagctcagccggtggcatg |
228 |
Q |
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| T |
2230342 |
catggctacgacgttcgacagctcagccggtggcatg |
2230378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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