View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_459 (Length: 229)
Name: NF7829A_low_459
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_459 |
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| [»] chr4 (4 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 18339874 - 18339646
Alignment:
| Q |
1 |
tcattttaccaccttcggtggaaatcgttgataatacacaacatatagctaacctaacagaacctattaatttgtgtattgaattacaaattgagaggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18339874 |
tcattttaccaccttcggtggaaatcgttgataatacacaacatatagctaacctaacagaacctattaatttgtgtattgaattacaaattgagaggaa |
18339775 |
T |
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| Q |
101 |
gcgtggatatcgtataaaaacactaaacaacattcaagatggaagttatactatagatgcagtatttatgcctgttagaaatgcaaatcatagtattcat |
200 |
Q |
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| T |
18339774 |
gcgtggatatcgtataaaaacactaaacaacattcaagatggaagttatactatagatgcagtatttatgcctgttagaaatgcaaatcatagtattcat |
18339675 |
T |
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| Q |
201 |
tcttatgtgaatggtaatgagaaacaaga |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
18339674 |
tcttatgtgaatggtaatgagaaacaaga |
18339646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 22101579 - 22101401
Alignment:
| Q |
51 |
aacctaacagaacctattaatttgtgtattgaattacaaattgagaggaagcgtggatatcgtataaaaacactaaacaacattcaagatggaagttata |
150 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
22101579 |
aacctaacagaacctattaatttttgtattgaattacaaattgagaggaagcgtggatatcatataaaaacactaaacaacatttaagatggaagttata |
22101480 |
T |
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| Q |
151 |
ctatagatgcagtatttatgcctgttagaaatgcaaatcatagtattcattcttatgtgaatggtaatgagaaacaaga |
229 |
Q |
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| T |
22101479 |
ctatagatgcagtatctatgccggttagaaatgcaaatcatagtattcattcttatgtgaatggtaatgagaaacaaga |
22101401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 29443662 - 29443750
Alignment:
| Q |
13 |
cttcggtggaaatcgttgataatacacaacatatagctaacctaacagaacctattaatttgtgtattgaattacaaattgagaggaag |
101 |
Q |
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| T |
29443662 |
cttcggtggaaatcgttgataatacacaacatatagctaacctaacagaacctattaatttgtgtattgaattacaaattgagaggaag |
29443750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 39776145 - 39776070
Alignment:
| Q |
66 |
attaatttgtgtattgaattacaaattgagaggaagcgtggatatcgtataaaaacactaaacaacattcaagatg |
141 |
Q |
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| T |
39776145 |
attaatttgtgtattgaattacaaattgagaggaagcgtggatatcgtataaaaacactaaacaacattcaagatg |
39776070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 31379428 - 31379212
Alignment:
| Q |
1 |
tcattttaccaccttcggtggaaatcgttgataatacacaacatatagctaacctaacagaacctattaatttgtgtattgaattacaaattgagaggaa |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31379428 |
tcattttaccaccttcggtggaaattgttgataatacacaacatatagttaacctaacagaacctattaatttgtgtattgaattacaaattgataggaa |
31379329 |
T |
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| Q |
101 |
gcgtggatatcgtataaaaacactaaacaacattcaagatggaagttatactatagatgc-agtatttatgcctgttagaaatgcaaatcatagtattca |
199 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||| |
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| T |
31379328 |
gcatggatatcatataaaaacactaaacaacattcaagatggaagttatactatagatgcaagtatttatgcctcttggaaatgcaaatcatagtattca |
31379229 |
T |
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| Q |
200 |
ttcttatgtgaatggta |
216 |
Q |
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||||||||||||||||| |
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| T |
31379228 |
ttcttatgtgaatggta |
31379212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 327122 - 327187
Alignment:
| Q |
55 |
taacagaacctattaatttgtgtattgaattacaaattgagaggaagcgtggatatcgtataaaaa |
120 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
327122 |
taacagaagctgttaatttgtgtattgaattacaaattgagaggaatgatggatatcgtataaaaa |
327187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 38592837 - 38592692
Alignment:
| Q |
1 |
tcattttaccaccttcggtggaaatcgttgataatacacaacatatagctaacctaacagaacctattaatttgtgtattga--attacaaattgagagg |
98 |
Q |
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||||||||||||||| ||| ||||||||||||||| | || ||| |||||||||| |||||||||||||||| |||||||| |||||||||||| ||| |
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| T |
38592837 |
tcattttaccaccttatgtgaaaatcgttgataatataaaaaataaagctaacctatcagaacctattaatttatgtattgaatattacaaattgaaagg |
38592738 |
T |
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| Q |
99 |
aagcgtggatatcgtataaaaacactaaacaacattcaagatggaa |
144 |
Q |
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|||| | || ||||||||||||| |||||||||||||||||||| |
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| T |
38592737 |
aagctagaatggcgtataaaaacacaaaacaacattcaagatggaa |
38592692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 38596433 - 38596288
Alignment:
| Q |
1 |
tcattttaccaccttcggtggaaatcgttgataatacacaacatatagctaacctaacagaacctattaatttgtgtattga--attacaaattgagagg |
98 |
Q |
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||||||||||||||| ||| ||||||||||||||| | || ||| |||||||||| |||||||||||||||| |||||||| |||||||||||| ||| |
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| T |
38596433 |
tcattttaccaccttatgtgaaaatcgttgataatataaaaaataaagctaacctatcagaacctattaatttatgtattgaatattacaaattgaaagg |
38596334 |
T |
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| Q |
99 |
aagcgtggatatcgtataaaaacactaaacaacattcaagatggaa |
144 |
Q |
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|||| | || ||||||||||||| |||||||||||||||||||| |
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| T |
38596333 |
aagctagaatggcgtataaaaacacaaaacaacattcaagatggaa |
38596288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 8964995 - 8965071
Alignment:
| Q |
17 |
ggtggaaatcgttgataatacacaacatatagctaacctaacagaacctattaatttgtgtattgaattacaaattg |
93 |
Q |
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|||||||||||||||| |||||||||||||||||||||| | ||||||| ||||||||||||||||| || |||||| |
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| T |
8964995 |
ggtggaaatcgttgatgatacacaacatatagctaaccttatagaacctgttaatttgtgtattgaaatataaattg |
8965071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 38557815 - 38557698
Alignment:
| Q |
45 |
atagctaacctaacagaacctattaatttgtgtattgaat--tacaaattgagaggaagcgtggatatcgtataaaaacac--taaacaacattcaagat |
140 |
Q |
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||||||||||||||| ||||||| ||||| || ||||||| ||||||| || |||||| |||| ||||||||||| || ||||||| ||||||||| |
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| T |
38557815 |
atagctaacctaacataacctataaattt-tgaattgaatattacaaatagaaaggaagttgggatgtcgtataaaaaaaccctaaacaatattcaagat |
38557717 |
T |
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| Q |
141 |
ggaagttatactatagatg |
159 |
Q |
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|||| ||| |||||||||| |
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| T |
38557716 |
ggaaattacactatagatg |
38557698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 42315430 - 42315365
Alignment:
| Q |
55 |
taacagaacctattaatttgtgtattgaattacaaattgagaggaagcgtggatatcgtataaaaa |
120 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42315430 |
taacagaagctgttaatttgtgtattgaattacaaattgagaggaatgatggatatcgtataaaaa |
42315365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 275065 - 274973
Alignment:
| Q |
134 |
tcaagatggaagttatactatagatgcagtatttatgcctgttagaaatgcaaatcatagtattcattcttatgtgaatggtaatgagaaaca |
226 |
Q |
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|||||||||||||||| |||||||||| |||| ||||||||| |||||| ||| |||||||| ||||| || |||||| ||||| ||||| |
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| T |
275065 |
tcaagatggaagttatcctatagatgctgtatccatgcctgttcgaaatgtgaattatagtattttttcttgtgggaatggaaatgaaaaaca |
274973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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