View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_465 (Length: 229)
Name: NF7829A_low_465
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_465 |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 44110728 - 44110863
Alignment:
| Q |
1 |
atgcaatcatttaatcaaattaaatatagtcacatttacatgcaaacatctaatcatttcctaccnnnnnnntcatattaa--atatcctaacaaggatt |
98 |
Q |
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| T |
44110728 |
atgcaaacatttaatcaaattaaatttagtcgcatttacatgcaaacatctaatcatttcctaccaaaaaaatcatattaaatatatcctaacaaggatt |
44110827 |
T |
|
| Q |
99 |
catagccaccactacaatgatgagtaagttttcata |
134 |
Q |
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| T |
44110828 |
catagccaccactacaatgatgagtaagttttcata |
44110863 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 33469313 - 33469248
Alignment:
| Q |
102 |
agccaccactacaatgatgagtaagttttcataatca-ttgacattt-atgtttatatgttacatt |
165 |
Q |
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| T |
33469313 |
agccaccactacaataactagtaagttttcatactcaattgacattttatgtttatatgttacatt |
33469248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 20530408 - 20530350
Alignment:
| Q |
121 |
agtaagttttcataat-cattgacattt-atgtttatatgttacattcttcccctttaa |
177 |
Q |
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| T |
20530408 |
agtaaattttcataattcattgacattttatgtttatatgttacatttttcctctttaa |
20530350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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