View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_466 (Length: 229)

Name: NF7829A_low_466
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_466
NF7829A_low_466
[»] chr8 (3 HSPs)
chr8 (10-225)||(280386-280601)
chr8 (10-225)||(635251-635466)
chr8 (10-225)||(821054-821269)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 280601 - 280386
Alignment:
Q  10 cacagacaatctagaaagaacttatggataaaatacaatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac 109  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  280601 cacagacaagctagaaagaacttatggataaaatataatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac 280502  T
Q  110 atctttataataataaactatagtagtattgaattgtgatattgaatatgtttcaatcagatgcatttcgatgataagaattcagaaaacaaaaaccata 209  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  280501 atctttataataataaactatagcagtattgaattgtgatattgaatatgtttcaatcagatgcattttgatgataagaattcagaaaacaaaaaccata 280402  T
Q  210 cgtacctgtttatttg 225  Q
    ||||||||||||||||    
T  280401 cgtacctgtttatttg 280386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 635251 - 635466
Alignment:
Q  10 cacagacaatctagaaagaacttatggataaaatacaatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac 109  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  635251 cacagacaagctagaaagaacttatggataaaatataatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac 635350  T
Q  110 atctttataataataaactatagtagtattgaattgtgatattgaatatgtttcaatcagatgcatttcgatgataagaattcagaaaacaaaaaccata 209  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  635351 atctttataataataaactatagcagtattgaattgtgatattgaatatgtttcaatcagatgcattttgatgataagaattcagaaaacaaaaaccata 635450  T
Q  210 cgtacctgtttatttg 225  Q
    ||||||||||||||||    
T  635451 cgtacctgtttatttg 635466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 821054 - 821269
Alignment:
Q  10 cacagacaatctagaaagaacttatggataaaatacaatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac 109  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821054 cacagacaagctagaaagaacttatggataaaatataatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac 821153  T
Q  110 atctttataataataaactatagtagtattgaattgtgatattgaatatgtttcaatcagatgcatttcgatgataagaattcagaaaacaaaaaccata 209  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  821154 atctttataataataaactatagcagtattgaattgtgatattgaatatgtttcaatcagatgcattttgatgataagaattcagaaaacaaaaaccata 821253  T
Q  210 cgtacctgtttatttg 225  Q
    ||||||||||||||||    
T  821254 cgtacctgtttatttg 821269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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