View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_469 (Length: 229)
Name: NF7829A_low_469
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_469 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 35613455 - 35613227
Alignment:
| Q |
1 |
aatagcctctagaagaccccaggcttcagcttcgactggcatgagggagcagtgtgaaaagtttgacataccggctataaattggcctgttgagtttcgg |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35613455 |
aatagcctctagaagaccccatgcttcagcttcgactggcatgagggagcagtgtgaaaagtttgacataccggctataaattggcctgttgagttacgg |
35613356 |
T |
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| Q |
101 |
atgcacaacccgtagcctgccactgagttgttgttgaatagcgcacaatcgacattgcatttcaagaatggaggcggtggctttgtccacagaaccgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35613355 |
atgcacaacccgtagcctgccactgagttgttgttgaatagcgcacaatcgacattgcatttcaagaatggaggcggtggctttgtccacagaaccgtgt |
35613256 |
T |
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| Q |
201 |
tatgtacctgctgtcccggattcttatga |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
35613255 |
tatgtacctgctgtcccggattcttatga |
35613227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 29292756 - 29292528
Alignment:
| Q |
1 |
aatagcctctagaagaccccaggcttcagcttcgactggcatgagggagcagtgtgaaaagtttgacataccggctataaattggcctgttgagtttcgg |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29292756 |
aatagcctctagaagaccccatgcttcagcttcgactggcatgagggagcagtgtgaaaagtttgacataccggctataaattggcctgttgagttacgg |
29292657 |
T |
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| Q |
101 |
atgcacaacccgtagcctgccactgagttgttgttgaatagcgcacaatcgacattgcatttcaagaatggaggcggtggctttgtccacagaaccgtgt |
200 |
Q |
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| T |
29292656 |
atgcacaacccgtagcctgccactgagttgttgttgaatagcgcacaatcgacattgcatttcaagaatggaggcggtggctttgtccacagaaccgtgt |
29292557 |
T |
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| Q |
201 |
tatgtacctgctgtcccggattcttatga |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
29292556 |
tatgtacctgctgtcccggattcttatga |
29292528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 39085729 - 39085501
Alignment:
| Q |
1 |
aatagcctctagaagaccccaggcttcagcttcgactggcatgagggagcagtgtgaaaagtttgacataccggctataaattggcctgttgagtttcgg |
100 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |
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| T |
39085729 |
aatagcctctagaagaccccatgcttcagcttcgacatgcatgagggagcagtgtgaaaagtttgacatatcggctataaattggccttttgagttacgg |
39085630 |
T |
|
| Q |
101 |
atgcacaacccgtagcctgccactgagttgttgttgaatagcgcacaatcgacattgcatttcaagaatggaggcggtggctttgtccacagaaccgtgt |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| | |||||||||||||||| ||| |
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| T |
39085629 |
atgcacaacctgtagcctgccactgagttgttgttgaatagtgcacaatcgacattgcaattcaagaatggaggtgacagctttgtccacagaactgtgc |
39085530 |
T |
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| Q |
201 |
tatgtacctgctgtcccggattcttatga |
229 |
Q |
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|||||||||| |||||||||||||||||| |
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| T |
39085529 |
tatgtacctgttgtcccggattcttatga |
39085501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 33646327 - 33646377
Alignment:
| Q |
116 |
cctgccactgagttgttgttgaatagcgcacaatcgacattgcatttcaag |
166 |
Q |
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||||| ||||||||||||||||| | ||||||||| ||||||||||||||| |
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| T |
33646327 |
cctgctactgagttgttgttgaacaacgcacaatctacattgcatttcaag |
33646377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 24467144 - 24466916
Alignment:
| Q |
1 |
aatagcctctagaagaccccaggcttcagcttcgactggcatgagggagcagtgtgaaaagtttgacataccggctataaattggcctgttgagtttcgg |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24467144 |
aatagcctctagaagaccccatgcttcagcttcgactggcatgagggagcagtgtgaaaagtttgacataccggctataaattggcctgttgagttacgg |
24467045 |
T |
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| Q |
101 |
atgcacaacccgtagcctgccactgagttgttgttgaatagcgcacaatcgacattgcatttcaagaatggaggcggtggctttgtccacagaaccgtgt |
200 |
Q |
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| T |
24467044 |
atgcacaacccgtagcctgccactgagttgttgttgaatagcgcacaatcgacattgcatttcaagaatggaggcggtggctttgtccacagaaccgtgt |
24466945 |
T |
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| Q |
201 |
tatgtacctgctgtcccggattcttatga |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
24466944 |
tatgtacctgctgtcccggattcttatga |
24466916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 4017351 - 4017579
Alignment:
| Q |
1 |
aatagcctctagaagaccccaggcttcagcttcgactggcatgagggagcagtgtgaaaagtttgacataccggctataaattggcctgttgagtttcgg |
100 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
4017351 |
aatagcctctagaagaccccatgcttcagcttcgactggcatgagggagcagtgtgaaaagtttgacataccggctataaattggtctgttgagttacgg |
4017450 |
T |
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| Q |
101 |
atgcacaacccgtagcctgccactgagttgttgttgaatagcgcacaatcgacattgcatttcaagaatggaggcggtggctttgtccacagaaccgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4017451 |
atgcacaacccgtagcctgccactgagttgttgttgaatagcgcacaatcgacattgcatttcaagaatggaggcggtggctttgtccacagaaccgtgt |
4017550 |
T |
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| Q |
201 |
tatgtacctgctgtcccggattcttatga |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4017551 |
tatgtacctgctgtcccggattcttatga |
4017579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 18769891 - 18769766
Alignment:
| Q |
1 |
aatagcctctagaagaccccaggcttcagcttcgactggcatgagggagcagtgtgaaaagtttgacataccggctataaattggcctgttgagtttcgg |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18769891 |
aatagcctctagaagaccccatgcttcagcttcgactggcatgagggagcagtgtgaaaagtttgacataccggctataaattggcctgttgagttacgg |
18769792 |
T |
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| Q |
101 |
atgcacaacccgtagcctgccactga |
126 |
Q |
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|||||||||||||||||||||||||| |
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| T |
18769791 |
atgcacaacccgtagcctgccactga |
18769766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 18769760 - 18769711
Alignment:
| Q |
180 |
gctttgtccacagaaccgtgttatgtacctgctgtcccggattcttatga |
229 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18769760 |
gctttgtccacagaaccgtgctatgtacctgctgtcccggattcttatga |
18769711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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