View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_47 (Length: 416)
Name: NF7829A_low_47
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_47 |
 | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0511 (2 HSPs) |
| | |
|
| [»] scaffold0230 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 16787838 - 16787447
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16787838 |
catcaatggatttctgtactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
16787739 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16787738 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttac |
16787639 |
T |
|
| Q |
220 |
atctagaggaaacttacagatggaggatgttggtaatgaggtatggaattaattatcccaaaggtcattttttcaagaagttaaatcagattttgttggt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16787638 |
atctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagttaaatcagattttgttggt |
16787539 |
T |
|
| Q |
320 |
aacattacattcaaaattcatgattttatccatgatttaggtcagtcttttatgggagaagaatgtatttcttatgatgtctcaaagttgac |
411 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16787538 |
aacattacattcaaaatgcatgattttatccatgatttaggtcagtcttttatgggagaagaatgtatttcttatgatgtctcaaagttgac |
16787447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 16987325 - 16986934
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| ||| ||||||||| |
|
|
| T |
16987325 |
catcaatggatttctgtactggaaagtgagatttggaatttacctgaggatgatcctatcatttctgctttgagactaagctacttcaacatgaaattgt |
16987226 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttac |
219 |
Q |
| |
|
| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16987225 |
cactaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcatctttggatggctaatggacttgttac |
16987126 |
T |
|
| Q |
220 |
atctagaggaaacttacagatggaggatgttggtaatgaggtatggaattaattatcccaaaggtcattttttcaagaagttaaatcagattttgttggt |
319 |
Q |
| |
|
||||||||| || |||||||||||| |||||||| |||||||||||||| |||||| ||||| ||||||||||||||||||||||| ||||| ||| |
|
|
| T |
16987125 |
atctagaggtaatttacagatggagcatgttggtgatgaggtatggaatcaattatggcaaagatcattttttcaagaagttaaatctgatttaacaggt |
16987026 |
T |
|
| Q |
320 |
aacattacattcaaaattcatgattttatccatgatttaggtcagtcttttatgggagaagaatgtatttcttatgatgtctcaaagttgac |
411 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16987025 |
aacattacattcaaaatgcatgattttatccatgatttagctcaatctattatgggagaagaatgtatttcttatgatgtttcaaagttgac |
16986934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 20 - 385
Target Start/End: Complemental strand, 16797040 - 16796675
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||| || ||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
16797040 |
catcaatggatttctgtactggaaagtgaattttggaatttacctcaggttgatcgtatcatgtctgctttgacactaagctactttaacttgaaattgt |
16796941 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttac |
219 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16796940 |
cattgaggccatgttttactttctgcgctgtttttcctaaggattttgaaatggtgaaggaacatctcattcatctttggatggctaatggacttgttac |
16796841 |
T |
|
| Q |
220 |
atctagaggaaacttacagatggaggatgttggtaatgaggtatggaattaattatcccaaaggtcattttttcaagaagttaaatcagattttgttggt |
319 |
Q |
| |
|
||||||||| || |||||||||||| |||||||||||| | ||||| || |||||| |||||||||||||||||||||||| ||||||||||| | ||| |
|
|
| T |
16796840 |
atctagaggtaatttacagatggagcatgttggtaatgggatatgggatgaattataccaaaggtcattttttcaagaagtcaaatcagatttagcaggt |
16796741 |
T |
|
| Q |
320 |
aacattacattcaaaattcatgattttatccatgatttaggtcagtcttttatgggagaagaatgt |
385 |
Q |
| |
|
||||||||||||||||| |||||||| | |||||||||| | ||||| |||||| |||||||||| |
|
|
| T |
16796740 |
aacattacattcaaaatgcatgatttagtgcatgatttagctaagtctgttatggtagaagaatgt |
16796675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 16780970 - 16780631
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
||||||||| ||||| || |||||||||| ||||||| ||| |||||||| | ||||||||||||| ||||||||||||||||||||| ||||| |||| |
|
|
| T |
16780970 |
catcaatggctttctgtaaaggaaagtgagctttggaagttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaatttgt |
16780871 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttac |
219 |
Q |
| |
|
|||| ||||| |||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16780870 |
ccttaaggccgtgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttac |
16780771 |
T |
|
| Q |
220 |
atctagaggaaacttacagatggaggatgttggtaatgaggtatggaattaattatcccaaaggtcattttttcaagaagttaaatcagattttgttggt |
319 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16780770 |
atctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagttaaatcagattttgtaggt |
16780671 |
T |
|
| Q |
320 |
aacattacattcaaaattcatgattttatccatgatttag |
359 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
16780670 |
aacattacattcaaaatgcatgatttagtccatgatttag |
16780631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 16657883 - 16657492
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||| |||| ||| | | | ||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
16657883 |
catcaatggatttctgtggtggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgt |
16657784 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttac |
219 |
Q |
| |
|
| ||||||||||||||||| || || ||||||||||| |||||||||||||||| |||||| | |||||| | ||||||||||||||||||||||||| |
|
|
| T |
16657783 |
cattgaggccatgttttactttttgtgctgtttttcctaaggattttgaaatggataaggaagaactcattaaactttggatggctaatggacttgttat |
16657684 |
T |
|
| Q |
220 |
atctagaggaaacttacagatggaggatgttggtaatgaggtatggaattaattatcccaaaggtcattttttcaagaagttaaatcagattttgttggt |
319 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| || ||| |
|
|
| T |
16657683 |
atctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagtaggt |
16657584 |
T |
|
| Q |
320 |
aacattacattcaaaattcatgattttatccatgatttaggtcagtcttttatgggagaagaatgtatttcttatgatgtctcaaagttgac |
411 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||||||| ||||||| ||||||||||||||||| | |||| |||||| ||||||||||| |
|
|
| T |
16657583 |
aacattacatttaaaatgcatgatttagtccatgatttagctcagtctattatgggagaagaatgtgtctcttgtgatgtttcaaagttgac |
16657492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 387
Target Start/End: Original strand, 16868290 - 16868657
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
|||||||||| |||| | ||||||||||||||||||||||| | || ||| | | | ||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
16868290 |
catcaatggacttctgtggtggaaagtgagttttggaatttagcagatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgt |
16868389 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttac |
219 |
Q |
| |
|
| ||||||||||||||||| || || ||||||||||| |||||||||||||||| |||||| | ||||||| |||||||||||||||||||||||||| |
|
|
| T |
16868390 |
cattgaggccatgttttactttttgtgctgtttttcctaaggattttgaaatggaaaaggaatttttcattcaactttggatggctaatggacttgttac |
16868489 |
T |
|
| Q |
220 |
atctagaggaaacttacagatggaggatgttggtaatgaggtatggaattaattatcccaaaggtcattttttcaagaagttaaatcagattttgttggt |
319 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| | ||||||||||| || ||| |
|
|
| T |
16868490 |
atctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatatcaaaggtcattttttcaagaaatcaaatcagatttagtaggt |
16868589 |
T |
|
| Q |
320 |
aacattacattcaaaattcatgattttatccatgatttaggtcagtcttttatgggagaagaatgtat |
387 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| | ||||| |||| |||||||||||||| |
|
|
| T |
16868590 |
aacattacattcaaaatgcatgatttagtccatgatttagctaagtctgttattggagaagaatgtat |
16868657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 385
Target Start/End: Complemental strand, 17069377 - 17069012
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||| || || | ||| ||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
17069377 |
catcaatggatttctgtggtggaaagtgagttttggaatttagacgatgagaaccctgtcatgtctgctttgagactaagctactataacttgaaattgt |
17069278 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttac |
219 |
Q |
| |
|
| ||||||||||||||||| ||||| | ||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17069277 |
cattgaggccatgttttactttctgtgttgtttttcctaaggattttgtaatggtgaaggaaaggctcattcatctttggatggctaatggatttgttac |
17069178 |
T |
|
| Q |
220 |
atctagaggaaacttacagatggaggatgttggtaatgaggtatggaattaattatcccaaaggtcattttttcaagaagttaaatcagattttgttggt |
319 |
Q |
| |
|
||||||||| || |||||||||||| |||||||||||||| ||||| || |||||| |||||||||||||||||||||||| ||||||||||| | ||| |
|
|
| T |
17069177 |
atctagaggtaatttacagatggagcatgttggtaatgagatatgggatgaattataccaaaggtcattttttcaagaagtcaaatcagatttagcaggt |
17069078 |
T |
|
| Q |
320 |
aacattacattcaaaattcatgattttatccatgatttaggtcagtcttttatgggagaagaatgt |
385 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||||||| | ||||| |||| |||||||||||| |
|
|
| T |
17069077 |
aacattacatttaaaatgcatgatttagtccatgatttagctaagtctgttattggagaagaatgt |
17069012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 18806486 - 18806677
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
||||||||| ||||| || ||||||| ||||||||| ||| | ||||| ||||||||||||||||||||||||| ||||||||||| |||||||| | |
|
|
| T |
18806486 |
catcaatggctttctgtaaaggaaagtaagttttggagcttatccgaggacaatcctatcatgtctgttttgagactcagctactttaatttgaaattat |
18806585 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatgga |
211 |
Q |
| |
|
| |||||| |||||||| || || || |||||||| |||||||||||||||||||||||| | || || ||||||||| ||||||||||| |
|
|
| T |
18806586 |
cactgaggctgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaaggaagaactgatccatctttggttggctaatgga |
18806677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 18873480 - 18873671
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
||||||||| ||||| || ||||||| ||||||||| ||| | ||||| |||||||||||||||| |||||||| ||||||||||| |||||||| | |
|
|
| T |
18873480 |
catcaatggctttctgtaaaggaaagtaagttttggagcttatccgaggacaatcctatcatgtctgtattgagactcagctactttaatttgaaattat |
18873579 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatgga |
211 |
Q |
| |
|
| |||||| |||||||| || || || |||||||| |||||||||||||||||||||||| | || || ||||||||| ||||||||||| |
|
|
| T |
18873580 |
cactgaggctgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaaggaagaactgatccatctttggttggctaatgga |
18873671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 113 - 300
Target Start/End: Complemental strand, 16843584 - 16843397
Alignment:
| Q |
113 |
aaattgtccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggac |
212 |
Q |
| |
|
||||| || |||| |||||||||||| || || ||||| ||||| || ||||||| ||||||||||||| || | ||||||||||||||||| |||||| |
|
|
| T |
16843584 |
aaattatcattgaagccatgttttacattttgtgctgtatttcctaaagattttgtaatggtgaaggaagatgtaattcatctttggatggcaaatggat |
16843485 |
T |
|
| Q |
213 |
ttgttacatctagaggaaacttacagatggaggatgttggtaatgaggtatggaattaattatcccaaaggtcattttttcaagaagt |
300 |
Q |
| |
|
|| || | || |||||||| ||| |||||||||| ||||| |||||||| |||||| || ||| ||| || ||||||||||||||||| |
|
|
| T |
16843484 |
ttatttcctccagaggaaatttagagatggaggaggttggcaatgaggtgtggaatgaactataccagagatcattttttcaagaagt |
16843397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 300
Target Start/End: Original strand, 18870507 - 18870676
Alignment:
| Q |
131 |
tgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacatctagaggaa |
230 |
Q |
| |
|
||||||||||| || | |||||||| |||||||||||||||||||||||| | || || ||||||||| || |||||||| | | | || | |||| |
|
|
| T |
18870507 |
tgttttaccttttgtgaggtttttcctaaggattttgaaatggtgaaggaagaactgatccatctttggttgactaatggattcatctcttccattggaa |
18870606 |
T |
|
| Q |
231 |
acttacagatggaggatgttggtaatgaggtatggaattaattatcccaaaggtcattttttcaagaagt |
300 |
Q |
| |
|
| ||| || ||||| |||||||| |||| || |||||| |||||| | || ||||||||||||||||| |
|
|
| T |
18870607 |
atttagaggtggagcatgttggtcatgaagtgtggaatgaattatatgagagatcattttttcaagaagt |
18870676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 387
Target Start/End: Original strand, 18806790 - 18806853
Alignment:
| Q |
324 |
ttacattcaaaattcatgattttatccatgatttaggtcagtcttttatgggagaagaatgtat |
387 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||| |||||| ||| |||||||||||||| |
|
|
| T |
18806790 |
ttacattcaaaatgcatgatttaattcatgatttagctcagtccattacaggagaagaatgtat |
18806853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 387
Target Start/End: Original strand, 18873784 - 18873847
Alignment:
| Q |
324 |
ttacattcaaaattcatgattttatccatgatttaggtcagtcttttatgggagaagaatgtat |
387 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||| |||||| ||| |||||||||||||| |
|
|
| T |
18873784 |
ttacattcaaaatgcatgatttaattcatgatttagctcagtccattacaggagaagaatgtat |
18873847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 392
Target Start/End: Complemental strand, 12720 - 12348
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
12720 |
catcaatggatttctgtactagaaagtgagttttggagtttacctgaggttgatcctatcatgtctgctttgagactaagctattttaacttgaaattgt |
12621 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttac |
219 |
Q |
| |
|
| ||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12620 |
cattgaggccatgttttactttctgtgctgtttttcccaaagattatgaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttac |
12521 |
T |
|
| Q |
220 |
atctagaggaaacttacagatggaggatgttggtaatgaggtatggaattaattatcccaaaggtcattttttcaagaagttaaatcagattttgttggt |
319 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| ||| |||||||||||||||||||||| ||| |
|
|
| T |
12520 |
atctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattataccaaaggtcattatttgaagaagttaaatcagattttgtaggt |
12421 |
T |
|
| Q |
320 |
aacattacattcaaaattcatgattttatccatgatttaggtcagtcttttatgggagaagaatgtatttctt |
392 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
12420 |
aacattactttcaaaatgcatgattttgtccatgatttagcagtgtctattatgggagatgaatgtatttctt |
12348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 399
Target Start/End: Complemental strand, 8378 - 7999
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||| |||||| |||| |||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
8378 |
catcaatggatttctgtactggaaagtgaattttggaatttgcctgaggttgattctatcatgtctgctttgagaataagctactttaacttgaaattgt |
8279 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttac |
219 |
Q |
| |
|
| ||||| ||||||||| | ||||| ||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8278 |
cattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaaaatctcattcatctttggatggctaatggtcttgttac |
8179 |
T |
|
| Q |
220 |
atctagaggaaacttacagatggaggatgttggtaatgaggtatggaattaattatcccaaaggtcattttttcaagaagttaaatcagattttgttggt |
319 |
Q |
| |
|
|||||||||||| |||||||||||| | |||||| |||||||||||||| |||| | ||||| ||||||||||||||||||||||| ||||| | ||| |
|
|
| T |
8178 |
atctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaattgtggcaaagatcattttttcaagaagttaaatctgatttagcaggt |
8079 |
T |
|
| Q |
320 |
aacattacattcaaaattcatgattttatccatgatttaggtcagtcttttatgggagaagaatgtatttcttatgatgt |
399 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||| |
|
|
| T |
8078 |
aacattacattccgaatgcatgattttatccatgatttagctcagtctattatggaaaaagaatgtatttcttatgatgt |
7999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 385
Target Start/End: Complemental strand, 17926 - 17561
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
||||||||| ||||| || |||||||||| ||||||||||| |||||||| | ||||| ||||||| ||||||||||||||||||||| ||||||| || |
|
|
| T |
17926 |
catcaatggctttctgtaaaggaaagtgaggtttggaatttatctgaggataaccctataatgtctgctttgagactaagctactttaatttgaaatcgt |
17827 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttac |
219 |
Q |
| |
|
|||||||||| |||||||| || || |||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
17826 |
ccttgaggccctgttttactttttgtactgtttttcctaaggattttgaaatggtgaaggaaaatatcattccattttggatggctaatggacttgttac |
17727 |
T |
|
| Q |
220 |
atctagaggaaacttacagatggaggatgttggtaatgaggtatggaattaattatcccaaaggtcattttttcaagaagttaaatcagattttgttggt |
319 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| |||||||||||||| ||| |
|
|
| T |
17726 |
atcaagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattaaaccaaaggtcattctttcaagaagtcaaatcagattttgtaggt |
17627 |
T |
|
| Q |
320 |
aacattacattcaaaattcatgattttatccatgatttaggtcagtcttttatgggagaagaatgt |
385 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| ||| || |||| |||||||||||| |
|
|
| T |
17626 |
aacattacattcaaaatgcatgatttagtccatgatttagctcattccattattggagaagaatgt |
17561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 385
Target Start/End: Original strand, 38939649 - 38940014
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
||||||||| ||||| || |||||||||| ||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
38939649 |
catcaatggttttctgtaaaggaaagtgagctttggaatttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaaattgt |
38939748 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttac |
219 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38939749 |
ccttgaggccatgttttaatttttgtgctgtttttcctaaggattttgaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttac |
38939848 |
T |
|
| Q |
220 |
atctagaggaaacttacagatggaggatgttggtaatgaggtatggaattaattatcccaaaggtcattttttcaagaagttaaatcagattttgttggt |
319 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
38939849 |
atcaagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattataccaaaggtcattttttcaagaagtcaaatcagattttgtaggt |
38939948 |
T |
|
| Q |
320 |
aacattacattcaaaattcatgattttatccatgatttaggtcagtcttttatgggagaagaatgt |
385 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||| ||||||| | ||||||||||||||| |
|
|
| T |
38939949 |
aacattacattcaaaatgcatgatttaatccatgatttagctcagtctgtaatgggagaagaatgt |
38940014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 20 - 385
Target Start/End: Original strand, 7053556 - 7053921
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||||||| |||||||| |||| |||||||||| |||||| || ||||||| ||| ||||||||| |
|
|
| T |
7053556 |
catcaatggctttctataaaggaaagcaagttttggaatttatctgaggataatccaatcatgtctgctttgaggctgagctactataatttgaaattgc |
7053655 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttac |
219 |
Q |
| |
|
| |||||||| |||||| | || || |||||||||||||| |||||||| || |||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
7053656 |
cattgaggccttgtttttctttttgtgctgtttttcccaaagattttgagatacataaggaatgcctcattcatctttggatggctaatggacttcttac |
7053755 |
T |
|
| Q |
220 |
atctagaggaaacttacagatggaggatgttggtaatgaggtatggaattaattatcccaaaggtcattttttcaagaagttaaatcagattttgttggt |
319 |
Q |
| |
|
|||||||||||| |||||||||||| | |||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| ||| | || || |
|
|
| T |
7053756 |
atctagaggaaatttacagatggagcttcttggtaatgaggtatggaatgaattatatcaaagatcattttttcaagaagttaaatctgatatagtaggg |
7053855 |
T |
|
| Q |
320 |
aacattacattcaaaattcatgattttatccatgatttaggtcagtcttttatgggagaagaatgt |
385 |
Q |
| |
|
||||||||||| ||||| |||||||| | |||||||||| |||||| ||||||||||||||||| |
|
|
| T |
7053856 |
aacattacatttaaaatgcatgatttggttcatgatttagctcagtccattatgggagaagaatgt |
7053921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 37361 - 36970
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||| |||| ||| | | ||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
37361 |
catcaatggatttctgtggtggaaagtgagttttggaatttagctgatgataaccaagtcatgtctgctttgagactgagctactttaacttgaaattgt |
37262 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttac |
219 |
Q |
| |
|
| ||||||||||||||||| || || ||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
37261 |
cattgaggccatgttttactttttgtgctgtttttcctaaggattttaaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttgc |
37162 |
T |
|
| Q |
220 |
atctagaggaaacttacagatggaggatgttggtaatgaggtatggaattaattatcccaaaggtcattttttcaagaagttaaatcagattttgttggt |
319 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| | ||| |
|
|
| T |
37161 |
atctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatatcaaaggtcattttttcaagaagtcgaatcagatttagcaggt |
37062 |
T |
|
| Q |
320 |
aacattacattcaaaattcatgattttatccatgatttaggtcagtcttttatgggagaagaatgtatttcttatgatgtctcaaagttgac |
411 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||| | |||| |||||| ||||||||||| |
|
|
| T |
37061 |
aacattacattcaaaatgcatgatttagtccatgatttagctcagtctattatgggagaagaatgtgtctcttgtgatgtttcaaagttgac |
36970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 40 - 381
Target Start/End: Complemental strand, 9002 - 8661
Alignment:
| Q |
40 |
ggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgtccttgaggccatgttttacc |
139 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
9002 |
ggaaagtgagctttggaatttaactgaggatgatcctatcatgtctgctttgagactaagctactttaatttgaaattgtccttgagaccatgttttact |
8903 |
T |
|
| Q |
140 |
ttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttacatctagaggaaacttacaga |
239 |
Q |
| |
|
|| || ||||||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8902 |
ttttgtgctgtttttcctaaagattttaaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttacatctagaggaaatttacaga |
8803 |
T |
|
| Q |
240 |
tggaggatgttggtaatgaggtatggaattaattatcccaaaggtcattttttcaagaagttaaatcagattttgttggtaacattacattcaaaattca |
339 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||| || |
|
|
| T |
8802 |
tggagcatgttggtaatgaggtatggaatgaattaaaccaaaggtcattctttcaagaagtcaaatccgattttgtaggtaacattactttcaaaatgca |
8703 |
T |
|
| Q |
340 |
tgattttatccatgatttaggtcagtcttttatgggagaaga |
381 |
Q |
| |
|
|||||| |||||||||||| ||| ||| ||||||||||||| |
|
|
| T |
8702 |
tgatttagtccatgatttagctcaatctgttatgggagaaga |
8661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 385
Target Start/End: Complemental strand, 13377962 - 13377598
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
||||||||| ||||| || ||||||| || ||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
13377962 |
catcaatggctttctgtaaaggaaagtaagctttggaatttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaaattgt |
13377863 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgttac |
219 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13377862 |
ccttgaggccatgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaaaatctcattctactttggatggctaatggacttgttac |
13377763 |
T |
|
| Q |
220 |
atctagaggaaacttacagatggaggatgttggtaatgaggtatggaattaattatcccaaaggtcattttttcaagaagttaaatcagattttgttggt |
319 |
Q |
| |
|
|||||||||||||||||| | |||| |||||||||||||||||||| || | |||| |||||| ||||||||||||||||||||||||||| | || ||| |
|
|
| T |
13377762 |
atctagaggaaacttaca-acggagcatgttggtaatgaggtatgggatgagttatgccaaagatcattttttcaagaagttaaatcagatgtggtaggt |
13377664 |
T |
|
| Q |
320 |
aacattacattcaaaattcatgattttatccatgatttaggtcagtcttttatgggagaagaatgt |
385 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||||||| ||| || | ||||||||||||||| |
|
|
| T |
13377663 |
aacataacattcaaaatgcatgatttagtccatgatttagctcaatccataatgggagaagaatgt |
13377598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 9224 - 9033
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
||||||||| ||||| || ||| ||| ||||||||| ||| | ||||| ||||||||||||||||||||||||| ||||||||||| |||||||| | |
|
|
| T |
9224 |
catcaatggctttctgtaaaggacagtaagttttggagcttatccgaggacaatcctatcatgtctgttttgagactcagctactttaatttgaaattat |
9125 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatgga |
211 |
Q |
| |
|
| ||||||| |||||||| || || || |||||||| |||||||||||||||||||||||| || || ||||||||| ||||||||||| |
|
|
| T |
9124 |
cactgaggccgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaaggaagcactgatccatctttggttggctaatgga |
9033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 8920 - 8857
Alignment:
| Q |
324 |
ttacattcaaaattcatgattttatccatgatttaggtcagtcttttatgggagaagaatgtat |
387 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||| |||||| ||| |||||||||||||| |
|
|
| T |
8920 |
ttacattcaaaatgcatgatttaattcatgatttagctcagtccattacaggagaagaatgtat |
8857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 4543 - 4352
Alignment:
| Q |
20 |
catcaatggatttctatactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
119 |
Q |
| |
|
||||||||| ||||| || ||||||| ||||||||| ||| | ||||| |||||||||||| |||||||||||| ||||||||||| || ||||| | |
|
|
| T |
4543 |
catcaatggctttctgtaaaggaaagtaagttttggagcttatccgaggacaatcctatcatgtttgttttgagactcagctactttaatttaaaattat |
4444 |
T |
|
| Q |
120 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatgga |
211 |
Q |
| |
|
| ||||||| |||||||| || || || |||||||| |||||||||||||||||||||||| | || || ||||||||| ||||||||||| |
|
|
| T |
4443 |
cactgaggccgtgttttactttttgtgcggtttttcctaaggattttgaaatggtgaaggaagaactgatccatctttggttggctaatgga |
4352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 4239 - 4176
Alignment:
| Q |
324 |
ttacattcaaaattcatgattttatccatgatttaggtcagtcttttatgggagaagaatgtat |
387 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||| |||||| ||| |||||||||||||| |
|
|
| T |
4239 |
ttacattcaaaatgcatgatttaattcatgatttagctcagtccattacaggagaagaatgtat |
4176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University