View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_472 (Length: 228)
Name: NF7829A_low_472
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_472 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 31069447 - 31069659
Alignment:
| Q |
16 |
ttgtttgcctttcatgtcttcttccttcagcaaggtgatgttaagcttcaaaaccatcccccctattcttcacttgtgtctcttcttctctttgaattct |
115 |
Q |
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| T |
31069447 |
ttgtttgcccttcatgtcttcttccttcagcaaggtgatgttaagcttcaaaaccattccccctattcttcacttgtgtctcttcttctctttgaattct |
31069546 |
T |
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| Q |
116 |
ctatttttcttagttctcgtgatttgatttttacctttattgtttgtctatgaagttgttcttctgctacttgaaagattttgtgggaagagaattgacg |
215 |
Q |
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| T |
31069547 |
ctatttttcttagttctcgtgatttgatttttacctttattgtttttctatgaagttgttcttctgctacttgaaagattttgcgggaagagaaatgacg |
31069646 |
T |
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| Q |
216 |
gtagaactcaaga |
228 |
Q |
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| T |
31069647 |
gtagaactcaaga |
31069659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 37614331 - 37614397
Alignment:
| Q |
162 |
tctatgaagttgttcttctgctacttgaaagattttgtgggaagagaattgacggtagaactcaaga |
228 |
Q |
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| T |
37614331 |
tctatgaagctgttcttctcgtacttcaaagatttggtgggaagagaagtgacggttgaactcaaga |
37614397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 42440432 - 42440505
Alignment:
| Q |
155 |
ttgtttgtctatgaagttgttcttctgctacttgaaagattttgtgggaagagaattgacggtagaactcaaga |
228 |
Q |
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| T |
42440432 |
ttgtttttgtatgtagttgttcttctcatacttcaaagatttggtgggaagagaagttacggtagaactcaaga |
42440505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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