View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_476 (Length: 228)
Name: NF7829A_low_476
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_476 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 808322 - 808095
Alignment:
| Q |
1 |
tccaccaacaagtatcacatcatttatatccccgacttctacctttgcatcatgtaaacattggatgataaggctttcacacttttcgaacacctcttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
808322 |
tccaccaacaagtatcacatcatttatatccccgacttctacctttgcatcatgtaaacattggatgataaggctttcacacttttcgaacacctctttg |
808223 |
T |
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| Q |
101 |
ttcacctcctcaaactccgccctgtcaacaaccttgcatatcttcaaactatttcccaaatctacatcaacctgaacactgctttgggtggaaagctgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
808222 |
ttcacctcctcaaactccgccctgtcaacaaccttgcatatcttcaaactatttcccaaatctacatcaacctgaacactgctttgggtggaaagctgat |
808123 |
T |
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| Q |
201 |
gaattgcatcctgggttgcaactcgaag |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
808122 |
gaattgcatcctgggttgcaactcgaag |
808095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 39241970 - 39241743
Alignment:
| Q |
1 |
tccaccaacaagtatcacatcatttatatccccgacttctacctttgcatcatgtaaacattggatgataaggctttcacacttttcgaacacctcttta |
100 |
Q |
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|||| |||||| |||||||||||||| |||| | |||| ||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||| || |
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| T |
39241970 |
tccatcaacaattatcacatcatttacatcctcaacttttacctttgcatcatgtaaacactggatgataaggctttcacattttccaaacacctgcttg |
39241871 |
T |
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| Q |
101 |
ttcacctcctcaaactccgccctgtcaacaaccttgcatatcttcaaactatttcccaaatctacatcaacctgaacactgctttgggtggaaagctgat |
200 |
Q |
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| T |
39241870 |
ttcacttcctcaaactctgccctatcaacaaccttgcatatcttcaaaccatctcccaagtccacatcaacctgaaaattgatttgagaggaaagccgat |
39241771 |
T |
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| Q |
201 |
gaattgcatcctgggttgcaactcgaag |
228 |
Q |
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| T |
39241770 |
gaattgcatcatgggttgcaactcgaag |
39241743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 47843185 - 47843006
Alignment:
| Q |
1 |
tccaccaacaagtatcacatcatttatatccccgacttctacctttgcatcatgtaaacattggatgataaggctttcacacttttcgaacacctcttta |
100 |
Q |
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||||||||||| |||||||||||||||||| | |||| || | |||||| || || | ||||||||| || |||||||||||||| |||||||||||| |
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| T |
47843185 |
tccaccaacaattatcacatcatttatatcatcaacttttatatctgcatcttgcaagctttggatgatcagcctttcacacttttcaaacacctcttta |
47843086 |
T |
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| Q |
101 |
ttcacctcctcaaactccgccctgtcaacaaccttgcatatcttcaaactatttcccaaatctacatcaacctgaacact |
180 |
Q |
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|| || |||||||||||| |||| | |||||||| ||||| ||||||| || |||||| |||| ||||| || |||||| |
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| T |
47843085 |
tttacatcctcaaactcctccctctttacaaccttacatattttcaaaccatctcccaagtctaaatcaaactcaacact |
47843006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 44727744 - 44727861
Alignment:
| Q |
1 |
tccaccaacaagtatcacatcatttatatccccgacttctacctttgcatcatgtaaacattggatgataaggctttcacacttttcgaacacctcttta |
100 |
Q |
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|||||| |||| ||||||||| ||||||| | | ||||||| ||||||||| |||| ||||||||||| || ||||||| ||||| ||||||||||| |
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| T |
44727744 |
tccacctacaattatcacatcgtttatattctcaacttctatctttgcatcttgtatgcattggatgattagcttttcacaattttcaaacacctctttg |
44727843 |
T |
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| Q |
101 |
ttcacctcctcaaactcc |
118 |
Q |
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| T |
44727844 |
tttacttcctcaaactcc |
44727861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 47845240 - 47845359
Alignment:
| Q |
1 |
tccaccaacaagtatcacatcatttatatccccgacttctacctttgcatcatgtaaacattggatgataaggc--tttcacacttttcgaacacctctt |
98 |
Q |
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|||||| |||| ||||||||||||||||| | ||| |||||||||||||| || ||||||||||| || | |||||||||| || |||||||||| |
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| T |
47845240 |
tccacctacaattatcacatcatttatattcttagtttccacctttgcatcatgcaagcattggatgattagcccctttcacacttctcaaacacctctt |
47845339 |
T |
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| Q |
99 |
tattcacctcctcaaactcc |
118 |
Q |
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| || || |||||||||||| |
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| T |
47845340 |
tgtttacatcctcaaactcc |
47845359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 21130945 - 21130990
Alignment:
| Q |
13 |
tatcacatcatttatatccccgacttctacctttgcatcatgtaaa |
58 |
Q |
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| T |
21130945 |
tatcacatcatttatattctcaacttctacctttgcatcttgtaaa |
21130990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 21251081 - 21251036
Alignment:
| Q |
13 |
tatcacatcatttatatccccgacttctacctttgcatcatgtaaa |
58 |
Q |
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| T |
21251081 |
tatcacatcatttatattctcaacttctacctttgcatcttgtaaa |
21251036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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