View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_479 (Length: 227)
Name: NF7829A_low_479
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_479 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 6073565 - 6073749
Alignment:
| Q |
23 |
ggagttcatttgcggaggagtcacggaggcgacagaggtaaacggtgcctatgtcgccggcgcctatacggcggaggagatggaagtcacggaaggtgag |
122 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6073565 |
ggagttcatttgaggaggagtcacggaggcgacagaggtaaacggtgcctatgtcgccggcgcctatacggcggaggagatggaagtcacggaaggtgag |
6073664 |
T |
|
| Q |
123 |
gccggatttgcggatggcggtgtaggcaaagtcggacgaacggtgaggtttgatggagagagattccggcgaggaggatggaagt |
207 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6073665 |
gccggatttgcggatggcggtgtaggcgaagtcggaggaacgatgaggtttgatggagagagattccggcgaggaggatggaagt |
6073749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 183
Target Start/End: Complemental strand, 37170181 - 37170044
Alignment:
| Q |
49 |
aggcgacagaggtaaacggtgcctatgtcgccggcgcctatacggcggaggagatggaagtcacggaaggtgaggccggatttg---cggatggcggtgt |
145 |
Q |
| |
|
||||| || |||||||| || || || || |||||||| |||||||||||||| ||||||||||| || ||||| |||| ||| |||||||||| || |
|
|
| T |
37170181 |
aggcggcataggtaaacagtaccgatatctccggcgccgatacggcggaggaggtggaagtcacgaaatgtgagagcggacttgcgacggatggcggagt |
37170082 |
T |
|
| Q |
146 |
aggcaaagtcggacgaacggtgaggtttgatggagaga |
183 |
Q |
| |
|
| || |||||||| || ||||||||||||| ||||||| |
|
|
| T |
37170081 |
aagcgaagtcggaggagcggtgaggtttgagggagaga |
37170044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University