View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_485 (Length: 225)
Name: NF7829A_low_485
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_485 |
 | |
|
| [»] scaffold0159 (1 HSPs) |
| | |
|
| [»] scaffold0380 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 41754726 - 41754526
Alignment:
| Q |
1 |
aaatgtatgttaaaactcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttgga |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
41754726 |
aaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcatatacttaagactttaaatt----ttgga |
41754631 |
T |
|
| Q |
101 |
tgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcat |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41754630 |
tgaagatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtcccaatggtgatatcat |
41754531 |
T |
|
| Q |
201 |
atctg |
205 |
Q |
| |
|
||||| |
|
|
| T |
41754530 |
atctg |
41754526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 3395788 - 3395607
Alignment:
| Q |
17 |
tcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatca |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||| |||| || ||| ||| ||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
3395788 |
tcaacattggataaaatattggaggttgaagaacaaataagtaaaaaataaatcatatacttaagtcttaa----aattttggatgaaaatgtaacatca |
3395693 |
T |
|
| Q |
117 |
ttatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatc |
203 |
Q |
| |
|
|| ||||| ||||||||||||||| ||||| ||||||||||||||||| |||| || |||||||||| |||||||||||||||||| |
|
|
| T |
3395692 |
ttttcacttgtgtgattgctctttctgcaacgtgtcgattcacacaagtgttgtct-ccccataagttccaatggtgatatcatatc |
3395607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 5789218 - 5789028
Alignment:
| Q |
9 |
gttaaaactcaatattggataaaatattggaggttgaagagtaaataagtgaaaa-taaactcacatatttaagactttaaattaattttggatgaaaat |
107 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| || ||| | | ||||| ||| || || ||||||||| || |
|
|
| T |
5789218 |
gttaaatctcaatattggataaaacattggaggttgaagaacaaataagtgaaaaatagacttattcagttaagtcttgaagtt----ttggatgaagat |
5789123 |
T |
|
| Q |
108 |
gtaacatcattatcactcgtgtgattgctctttatgcaatgtgtc--gattcacacaagcgttggctcccccataagtctcaatggtgatatcata |
201 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
5789122 |
gtaacatcattctcacttgtgtgattgctctttctgcaatgtgtcatcattcacacaagtgttggct-ccccataagtctcaatgttgatatcata |
5789028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 23142149 - 23141942
Alignment:
| Q |
1 |
aaatgtatgttaaaactcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaa-ctcacatatttaagactttaaattaattttgg |
99 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |||| |
|
|
| T |
23142149 |
aaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaaactcaaatacttaagactttaaatt----ttgg |
23142054 |
T |
|
| Q |
100 |
atgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatca |
199 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23142053 |
atgaagatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatca |
23141954 |
T |
|
| Q |
200 |
tatctggttcaa |
211 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
23141953 |
tatctgcttcaa |
23141942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 42797637 - 42797432
Alignment:
| Q |
1 |
aaatgtatgttaaaactcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttgga |
100 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
42797637 |
aaatgtatgttaaatcttaatattggataaaatattggaggttggagagtaaataagtgaaaataaactcttatacttaagacttta----aattttgga |
42797542 |
T |
|
| Q |
101 |
tgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcat |
200 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| || | |||||||||||||||||||||| |
|
|
| T |
42797541 |
tgaagatgtgacatcattatcactcgtgtgattgctctttctgcaatgtgtcgattcacacaagtgtttgct-cctcgtaagtctcaatggtgatatcat |
42797443 |
T |
|
| Q |
201 |
atctggttcaa |
211 |
Q |
| |
|
||||| ||||| |
|
|
| T |
42797442 |
atctgcttcaa |
42797432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 13756277 - 13756476
Alignment:
| Q |
1 |
aaatgtatgttaaaactcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttgga |
100 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| |
|
|
| T |
13756277 |
aaatatatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcatata-------ctttaaatt----ttgga |
13756365 |
T |
|
| Q |
101 |
tgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcat |
200 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
13756366 |
tgaagatgtaacatcattatcacttgtgtgattgctctttctgcaatgtgtcgattcacacaagcgttggcttccacataagtcccaatggtgatatcat |
13756465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 10901670 - 10901547
Alignment:
| Q |
9 |
gttaaaactcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatg |
108 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||| | |||| |||||| || | | ||||||||| ||| ||||||||||||| ||| |
|
|
| T |
10901670 |
gttaaatctcaacattggataaaatattggaggttgaagaacatataaatgaaaaataaattatatatttaagtctt------aattttggatgaagatg |
10901577 |
T |
|
| Q |
109 |
taacatcattatcactcgtgtgattgctct |
138 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||| |
|
|
| T |
10901576 |
taacatcattttcacttgtgcgattgctct |
10901547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 21589165 - 21588990
Alignment:
| Q |
22 |
attggataaaatattggaggttgaagagtaaataagtg-aaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattat |
120 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| |||| ||||||| || | ||| ||| ||||| ||| | ||| ||| |||||||| | |
|
|
| T |
21589165 |
attggataaaatattggaggtcgaagaacaaataagtggaaaaaaaactca--tactaaagccttaaaatt----ttgaaagaagatgcgacatcattct |
21589072 |
T |
|
| Q |
121 |
cactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatat |
202 |
Q |
| |
|
||| ||||| ||| | ||| ||||||||||||| ||||||||| |||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
21589071 |
cacctgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcatat |
21588990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 50814530 - 50814733
Alignment:
| Q |
1 |
aaatgtatgttaaaactcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttgga |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
50814530 |
aaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaac--acatacttaagactttaaatt----ttgga |
50814623 |
T |
|
| Q |
101 |
tgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcat |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
50814624 |
tgaagatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtcccaatggtgatatcat |
50814723 |
T |
|
| Q |
201 |
atctggttca |
210 |
Q |
| |
|
||||| |||| |
|
|
| T |
50814724 |
atctgcttca |
50814733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 13228443 - 13228624
Alignment:
| Q |
17 |
tcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatca |
116 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| ||||||||||||| || ||| || ||||| ||| ||||| ||| ||||||||||||||||| |
|
|
| T |
13228443 |
tcaacattggataagatattggaggttgaagaacaaataagtgaaaaataaatcatatccttaagtcttaaaatt----ttgaatgaaaatgtaacatca |
13228538 |
T |
|
| Q |
117 |
ttatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatc |
203 |
Q |
| |
|
|| ||||| ||||||||||||||| ||||||| || |||||||||||| ||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
13228539 |
ttttcacttgtgtgattgctctttctgcaatgcgttgattcacacaagtgttggct-ccccataagtttcaatggtgatatcatatc |
13228624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 39974599 - 39974775
Alignment:
| Q |
22 |
attggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatc |
121 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| ||| ||| | |||| | ||| ||| ||||| ||||| ||| ||| |||||||| || |
|
|
| T |
39974599 |
attggataaaatattggaggtcgaagaacaaataagtggaaaaaaaaactcatactaaagccttaaaatt----ttggaagaagatgcgacatcattctc |
39974694 |
T |
|
| Q |
122 |
actcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatat |
202 |
Q |
| |
|
|| ||||| ||| | ||| ||||||||||||| ||||||||| |||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
39974695 |
acctgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcatat |
39974775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 49953290 - 49953180
Alignment:
| Q |
92 |
aattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatgg |
191 |
Q |
| |
|
||||||||||||| | | |||||||| ||||| ||||| ||| | ||| |||||||| |||| ||||||||| |||| ||||||| |||||| ||| || |
|
|
| T |
49953290 |
aattttggatgaagacgcgacatcattctcacttgtgtggttgttttttctgcaatgtttcgaatcacacaagtgttgtctcccccgtaagtcccaacgg |
49953191 |
T |
|
| Q |
192 |
tgatatcatat |
202 |
Q |
| |
|
||||||||||| |
|
|
| T |
49953190 |
tgatatcatat |
49953180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 281691 - 281816
Alignment:
| Q |
22 |
attggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatc |
121 |
Q |
| |
|
||||||||||||| ||||||| ||||| ||||||||||||| ||||||| ||| | ||| ||| | ||||||||||||| ||| |||||||| || |
|
|
| T |
281691 |
attggataaaatactggaggtcgaagaacaaataagtgaaaaaaaactcatatactaaagccttaa----aattttggatgaagatgcgacatcattctc |
281786 |
T |
|
| Q |
122 |
actcgtgtgattgctctttatgcaatgtgt |
151 |
Q |
| |
|
||| ||||| ||| | ||| |||||||||| |
|
|
| T |
281787 |
acttgtgtggttgttttttctgcaatgtgt |
281816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 50332278 - 50332073
Alignment:
| Q |
2 |
aatgtatgttaaaactcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggat |
101 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |||||| |
|
|
| T |
50332278 |
aatgtatgttaaatctcaatattggataaaatattagaggttgaagagtaaataagtgaaaataaactcatatacttaatactttaaatt----ttggat |
50332183 |
T |
|
| Q |
102 |
gaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcata |
201 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50332182 |
gaagatgtaacatcattatcactcgtgtgattgctctttctgcaatgtgacgattcacacaagcgttggctcccccataagtcccaatggtgatatcata |
50332083 |
T |
|
| Q |
202 |
tctggttcaa |
211 |
Q |
| |
|
|||| ||||| |
|
|
| T |
50332082 |
tctgcttcaa |
50332073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 12746321 - 12746150
Alignment:
| Q |
26 |
gataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatcactc |
125 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||||| ||||||| ||| || || ||||| |||||||||||| ||| |||||||| ||||| |
|
|
| T |
12746321 |
gataaaatattggagatcgaagaacaaataagtgaaaaaaaactcatataccaaa-accttaaa---attttggatgaagatgcgacatcattctcactt |
12746226 |
T |
|
| Q |
126 |
gtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatat |
202 |
Q |
| |
|
||||||||||| | | |||||||| |||| ||||||||| |||| |||||| ||| || ||||||||||||||||| |
|
|
| T |
12746225 |
gtgtgattgct-tctctgcaatgtatcgaatcacacaagtgttgtctcccctgtaattcccaatggtgatatcatat |
12746150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 202
Target Start/End: Original strand, 36095931 - 36096041
Alignment:
| Q |
92 |
aattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatgg |
191 |
Q |
| |
|
||||||||| ||| ||| |||||||| |||| |||| ||| | ||| ||||||||||||| ||||||||| |||| |||||| || ||| |||||| |
|
|
| T |
36095931 |
aattttggaagaagatgcgacatcattctcacctttgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtatcccccgtatgtcccaatgg |
36096030 |
T |
|
| Q |
192 |
tgatatcatat |
202 |
Q |
| |
|
||||||||||| |
|
|
| T |
36096031 |
tgatatcatat |
36096041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 15721569 - 15721438
Alignment:
| Q |
1 |
aaatgtatgttaaaactcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttgga |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
15721569 |
aaatgtatgttaaatctcaatattggataaaatattggaggttgaatagtaaataagtgaaaataaactcatatacttaagacttta----aattttgga |
15721474 |
T |
|
| Q |
101 |
tgaaaatgtaacatcattatcactcgtgtgattgct |
136 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15721473 |
tgaagatgtaacatcattatcactcgtgtgattgct |
15721438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 1594553 - 1594684
Alignment:
| Q |
1 |
aaatgtatgttaaaactcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttgga |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
1594553 |
aaatgtatgttaaatctcaatattggataaaatattggaggttgaatagtaaataagtgaaaataaactcatatacttaagacttta----aattttgga |
1594648 |
T |
|
| Q |
101 |
tgaaaatgtaacatcattatcactcgtgtgattgct |
136 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1594649 |
tgaagatgtaacatcattatcactcgtgtgattgct |
1594684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 1599542 - 1599622
Alignment:
| Q |
131 |
attgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctggttcaa |
211 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| || ||||| |
|
|
| T |
1599542 |
attgctctttctgcaatgtgtcgattcacacaagtattggctcccccataagtcccaaaggtgatatcatatatgcttcaa |
1599622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 203
Target Start/End: Original strand, 26894729 - 26894835
Alignment:
| Q |
96 |
ttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgat |
195 |
Q |
| |
|
||||||||| ||| ||||| ||| ||| | |||||||| |||||| |||||||||| |||||||||| ||||||| ||||||||||| |||| |||| |
|
|
| T |
26894729 |
ttggatgaagatgaaacat-attctcatttgtgtgatttctctttctgcaatgtgtgtattcacacaactgttggctaccccataagtcccaataatgat |
26894827 |
T |
|
| Q |
196 |
atcatatc |
203 |
Q |
| |
|
|| ||||| |
|
|
| T |
26894828 |
ataatatc |
26894835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 26894686 - 26894725
Alignment:
| Q |
9 |
gttaaaactcaatattggataaaatattggaggttgaaga |
48 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
26894686 |
gttaaacctcaacattggataaaatattggaggttgaaga |
26894725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 33591 - 33401
Alignment:
| Q |
9 |
gttaaaactcaatattggataaaatattggaggttgaagagtaaataagtgaaaa-taaactcacatatttaagactttaaattaattttggatgaaaat |
107 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| || ||| | | ||||| ||| || || ||||||||| || |
|
|
| T |
33591 |
gttaaatctcaatattggataaaacattggaggttgaagaacaaataagtgaaaaatagacttattcagttaagtcttgaagtt----ttggatgaagat |
33496 |
T |
|
| Q |
108 |
gtaacatcattatcactcgtgtgattgctctttatgcaatgtgtc--gattcacacaagcgttggctcccccataagtctcaatggtgatatcata |
201 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
33495 |
gtaacatcattctcacttgtgtgattgctctttctgcaatgtgtcatcattcacacaagtgttggct-ccccataagtctcaatgttgatatcata |
33401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 43387428 - 43387253
Alignment:
| Q |
23 |
ttggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatca |
122 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||| || ||| ||| ||||| ||| | ||||||||||||| ||||||||| ||| ||| |
|
|
| T |
43387428 |
ttggataaaatattggaggttgaagaacatataagtgaaaaataaatcatatacttaagtcttaa----aattttggatgaagatgtaacattattttca |
43387333 |
T |
|
| Q |
123 |
ctcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatc |
203 |
Q |
| |
|
|| ||||||||||| ||| | || |||||| ||||||||||| ||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
43387332 |
cttgtgtgattgctttttctacattgtgtcaattcacacaagtgttggat-ccccataagtcccaatggtgatatcatatc |
43387253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 14347 - 14458
Alignment:
| Q |
92 |
aattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatgg |
191 |
Q |
| |
|
||||||||||||| ||||||||| | | ||||| |||||||||| |||| | |||||||| |||||||||||| ||||||||| |||||||||| ||||| |
|
|
| T |
14347 |
aattttggatgaagatgtaacattagtctcacttgtgtgattgccctttcttcaatgtgttgattcacacaagtgttggctcctccataagtcttaatgg |
14446 |
T |
|
| Q |
192 |
tgatatcatatc |
203 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14447 |
tgatatcatatc |
14458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 33014206 - 33014030
Alignment:
| Q |
22 |
attggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatc |
121 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| |||||| ||||||| ||| | ||| ||| | |||||| |||||||||| |||||||| || |
|
|
| T |
33014206 |
attggataaaatattggaggtcgaagaacaaataaatgaaaaaaaactcatatactaaagtcttaa----aattttagatgaaaatgcgacatcattctc |
33014111 |
T |
|
| Q |
122 |
actcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatat |
202 |
Q |
| |
|
||| ||||| ||| | ||| ||||||||||||| ||||||||| |||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
33014110 |
acttgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccatgtaagtcccaatggtgatatcatat |
33014030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 38016182 - 38016086
Alignment:
| Q |
106 |
atgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatc |
203 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||| |||||| | |||||||||||||| | ||||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
38016182 |
atgtaacatcattattacttgtgtgattgctctttctgcaatatatcgattcacacaagtgctggct-ccccataagtcccaatggcgatatcatatc |
38016086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 50535 - 50473
Alignment:
| Q |
9 |
gttaaaactcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactca |
71 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
50535 |
gttaaatctccacattggataaaatattggaggttagagaataaataagtgaaaaaaaactca |
50473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University