View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_490 (Length: 225)
Name: NF7829A_low_490
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_490 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 26179727 - 26179531
Alignment:
| Q |
13 |
agtttggtgttatgtgtgacagagatggaactgtcttatttagaatttgatgtagtttgcgacaacagtaatagtttgagccatttagctcagaagaagt |
112 |
Q |
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| T |
26179727 |
agtttggagctatgtgtgacagagatggaactgtcttatttagaatttgatgtagtttgcgacagcagtaatagtttgagccatttagctcagaagaagt |
26179628 |
T |
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| Q |
113 |
tgaaattgttgctgaaaattataataatatattcttaagttggttcagcttcaaaactagtttaatttgtttccttttctaggtcaatgcttatgat |
209 |
Q |
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| T |
26179627 |
tgaaatttttgctgaaaattataataatatattcttaagttggttcagcttcaaaactagtttaatttgtttctttttctaggtcaatgcttatgat |
26179531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 209
Target Start/End: Complemental strand, 120437 - 120296
Alignment:
| Q |
69 |
ttgcgacaacagtaatagtttgagccatttagctcagaagaagttgaaa-ttgttgctgaaaattataataatatattcttaagttggttcagcttcaaa |
167 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||| |||||| || |||||||||||| || || | |||||||||||||||||||||||||| |
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| T |
120437 |
ttgcgacagcagtaatagtttgagccatttacctcagaagaatttgaaagtttttgctgaaaattttattagtctattcttaagttggttcagcttcaaa |
120338 |
T |
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| Q |
168 |
actagtttaatttgtttccttttctaggtcaatgcttatgat |
209 |
Q |
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| T |
120337 |
actagttttatttgtttctttttctaggtcaatggttatgat |
120296 |
T |
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