View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_493 (Length: 224)
Name: NF7829A_low_493
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_493 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 23957376 - 23957565
Alignment:
| Q |
21 |
atgggagagttgagagaaaacaccaacatcttttgaatgtaggtagagccctcaaatatcagtctaaactgtttgcatcatattggtcttatgccctttt |
120 |
Q |
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| T |
23957376 |
atgggagagttgagagaaaacaccaacatcttttgaacgtaggcagagccctcctatatcagtctaaactgtttgcatcatattggtattatgctctttt |
23957475 |
T |
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| Q |
121 |
acatgctaccttcatcataaatagagtcacatcacctcatcttcacaataaatcaccttatcatttactccataatcaaattcctgatgt |
210 |
Q |
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| T |
23957476 |
acatgctaccttcatcataaatagactcacatcacctcatcttcacaataaatcaccttatcatttactccataatcatattcctgatgt |
23957565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 20324086 - 20324038
Alignment:
| Q |
21 |
atgggagagttgagagaaaacaccaacatcttttgaatgtaggtagagc |
69 |
Q |
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| T |
20324086 |
atggtagagttgagaggaaacatcaacatattttgaatgttggtagagc |
20324038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 20852108 - 20851919
Alignment:
| Q |
21 |
atgggagagttgagagaaaacaccaacatcttttgaatgtaggtagagccctcaaatatcagtctaaactgtttgcatcatattggtcttatgccctttt |
120 |
Q |
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| T |
20852108 |
atggaagagttgagagaaagcttgaatatcttttggatgtaggcagagccttcctttataaatctaaattgccagcatcttattggtcttatgctctttt |
20852009 |
T |
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| Q |
121 |
acatgctaccttcatcataaatagagtcacatcacctcatcttcacaataaatcaccttatcatttactccataatcaaattcctgatgt |
210 |
Q |
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| T |
20852008 |
acatgccaccttcatcatcaatagagtcacatcacctcacctccacaataaatcaccatctcatttacttcataataaaattcctaatgt |
20851919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 12301051 - 12301199
Alignment:
| Q |
35 |
agaaaacaccaacatcttttgaatgtaggtagagccctcaaatatcagtctaaactgtttgcatcatattggtcttatgcccttttacatgctaccttca |
134 |
Q |
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|||||||| |||||| || | |||||| ||||||| ||| ||||| || ||||| ||| || |||||||| ||||| || |||||||||| |||| |
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| T |
12301051 |
agaaaacatcaacatattctcaatgtaagtagagctctcctgtatcaatccaaacttcctgcttcttattggtcatatgctctcctacatgctactttca |
12301150 |
T |
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| Q |
135 |
tcataaatagagtcacatcacctcatcttcacaataaatcaccttatca |
183 |
Q |
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| T |
12301151 |
tcatcaatagagtcacttcacttaatctccataacaaatcaccatatca |
12301199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 16986797 - 16986845
Alignment:
| Q |
21 |
atgggagagttgagagaaaacaccaacatcttttgaatgtaggtagagc |
69 |
Q |
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| T |
16986797 |
atgggagagttgagagaaagcaccaacatattttgaatgtaggcagagc |
16986845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 21809157 - 21809109
Alignment:
| Q |
21 |
atgggagagttgagagaaaacaccaacatcttttgaatgtaggtagagc |
69 |
Q |
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||||||||||||||||||| |||||| || ||||||||||||| ||||| |
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| T |
21809157 |
atgggagagttgagagaaagcaccaatatattttgaatgtaggcagagc |
21809109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 19653727 - 19653815
Alignment:
| Q |
101 |
tattggtcttatgcccttttacatgctaccttcatcataaatagagtcacatcacctcatcttcacaataaatcaccttatcatttact |
189 |
Q |
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|||||||| ||||| || ||||||| ||||| ||||| |||||||| || || ||| | |||||||||||||| ||||||| ||||| |
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| T |
19653727 |
tattggtcatatgctctcctacatgccacctttatcatcaatagagttacttcccctaaccttcacaataaatcttcttatcagttact |
19653815 |
T |
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