View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_495 (Length: 223)

Name: NF7829A_low_495
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_495
NF7829A_low_495
[»] chr1 (9 HSPs)
chr1 (1-223)||(51052392-51052614)
chr1 (1-223)||(11909111-11909333)
chr1 (1-223)||(35540961-35541183)
chr1 (1-223)||(6050515-6050737)
chr1 (28-125)||(16917842-16917939)
chr1 (29-110)||(47623111-47623192)
chr1 (28-110)||(43388392-43388474)
chr1 (28-213)||(37191243-37191428)
chr1 (28-73)||(28351776-28351821)
[»] chr3 (19 HSPs)
chr3 (1-223)||(19920235-19920457)
chr3 (1-223)||(2364189-2364411)
chr3 (1-223)||(7312688-7312910)
chr3 (1-223)||(10323577-10323799)
chr3 (1-214)||(34332821-34333034)
chr3 (1-222)||(40930534-40930755)
chr3 (41-114)||(7032339-7032412)
chr3 (28-110)||(29523778-29523860)
chr3 (28-110)||(11203844-11203926)
chr3 (29-110)||(33496572-33496653)
chr3 (28-110)||(12342259-12342340)
chr3 (37-125)||(7031059-7031147)
chr3 (28-110)||(26771022-26771104)
chr3 (18-124)||(963186-963292)
chr3 (28-110)||(36801108-36801190)
chr3 (18-110)||(2755867-2755959)
chr3 (14-101)||(15312617-15312704)
chr3 (37-131)||(16178952-16179046)
chr3 (28-86)||(35214404-35214462)
[»] chr5 (22 HSPs)
chr5 (1-223)||(12825111-12825333)
chr5 (1-223)||(30732320-30732542)
chr5 (1-223)||(27117167-27117389)
chr5 (1-223)||(42513632-42513854)
chr5 (81-223)||(12820035-12820177)
chr5 (1-214)||(23238305-23238518)
chr5 (1-222)||(28535681-28535902)
chr5 (13-214)||(8227947-8228148)
chr5 (1-222)||(35983797-35984018)
chr5 (4-178)||(42928088-42928262)
chr5 (28-138)||(19255155-19255265)
chr5 (1-124)||(31641523-31641645)
chr5 (137-223)||(3418695-3418781)
chr5 (28-125)||(25857457-25857554)
chr5 (29-223)||(10776676-10776870)
chr5 (28-114)||(27767063-27767149)
chr5 (28-125)||(8300215-8300312)
chr5 (28-223)||(33385407-33385602)
chr5 (18-157)||(33169636-33169775)
chr5 (28-110)||(18359125-18359207)
chr5 (4-110)||(26072917-26073023)
chr5 (1-114)||(27165958-27166071)
[»] chr2 (7 HSPs)
chr2 (1-223)||(4552081-4552303)
chr2 (28-223)||(41206928-41207123)
chr2 (28-223)||(15917566-15917761)
chr2 (28-212)||(12645459-12645643)
chr2 (30-110)||(28252745-28252825)
chr2 (30-149)||(14439738-14439857)
chr2 (28-110)||(17764995-17765077)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-223)||(105849-106071)
[»] chr8 (17 HSPs)
chr8 (1-223)||(7924298-7924520)
chr8 (1-223)||(8299715-8299937)
chr8 (1-223)||(172015-172237)
chr8 (1-214)||(13396309-13396522)
chr8 (1-214)||(32266485-32266698)
chr8 (1-214)||(41665375-41665588)
chr8 (1-222)||(9922514-9922735)
chr8 (28-125)||(20824306-20824403)
chr8 (28-110)||(17699507-17699589)
chr8 (28-149)||(2170328-2170449)
chr8 (28-212)||(13200046-13200230)
chr8 (167-223)||(20496996-20497052)
chr8 (28-110)||(37434157-37434239)
chr8 (63-212)||(2529809-2529958)
chr8 (43-110)||(34137011-34137078)
chr8 (28-223)||(43270362-43270557)
chr8 (28-128)||(5181677-5181777)
[»] chr7 (11 HSPs)
chr7 (1-223)||(4938134-4938356)
chr7 (1-222)||(11277258-11277479)
chr7 (1-222)||(47876896-47877117)
chr7 (1-214)||(29967896-29968109)
chr7 (1-222)||(235443-235666)
chr7 (1-222)||(17720548-17720769)
chr7 (1-214)||(37919465-37919678)
chr7 (111-223)||(31177421-31177533)
chr7 (28-149)||(18532614-18532735)
chr7 (28-213)||(25619381-25619566)
chr7 (28-110)||(37254783-37254865)
[»] chr4 (16 HSPs)
chr4 (1-223)||(23642597-23642819)
chr4 (1-223)||(47418716-47418938)
chr4 (1-223)||(13270897-13271119)
chr4 (1-222)||(47685901-47686122)
chr4 (1-223)||(1828546-1828768)
chr4 (5-213)||(15740143-15740351)
chr4 (1-214)||(19755185-19755401)
chr4 (1-214)||(19784405-19784621)
chr4 (1-222)||(7403826-7404047)
chr4 (146-223)||(159842-159919)
chr4 (28-110)||(12697838-12697920)
chr4 (28-110)||(45472742-45472824)
chr4 (28-114)||(55725719-55725805)
chr4 (30-110)||(11587233-11587313)
chr4 (28-109)||(8361126-8361207)
chr4 (28-110)||(20002750-20002832)
[»] scaffold0369 (1 HSPs)
scaffold0369 (1-223)||(11211-11433)
[»] chr6 (15 HSPs)
chr6 (20-223)||(12734037-12734240)
chr6 (1-214)||(2553558-2553771)
chr6 (1-178)||(18651240-18651417)
chr6 (1-222)||(24767430-24767651)
chr6 (1-114)||(21168220-21168333)
chr6 (28-125)||(17579114-17579211)
chr6 (28-125)||(17573688-17573785)
chr6 (30-213)||(14373026-14373209)
chr6 (28-110)||(17606367-17606449)
chr6 (28-114)||(21630140-21630226)
chr6 (28-177)||(20883066-20883215)
chr6 (28-110)||(10577282-10577364)
chr6 (28-110)||(15958846-15958928)
chr6 (18-124)||(13937711-13937817)
chr6 (32-114)||(33185457-33185539)
[»] scaffold0472 (1 HSPs)
scaffold0472 (1-214)||(3173-3386)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 51052614 - 51052392
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51052614 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatc 51052515  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51052514 ggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcattt 51052415  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  51052414 gtttttgtcttgtgcaacttttg 51052392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11909111 - 11909333
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  11909111 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatcattgcttggcgacttctgagggatc 11909210  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  11909211 ggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggctatgtgtttctggatgtgggattgtcgaagatgtttctcattt 11909310  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  11909311 gtttttgtcttgtgcaacttttg 11909333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 35541183 - 35540961
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35541183 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagggatc 35541084  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    ||||||| ||||||| |||||||| |||||| |||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||| | |||||||    
T  35541083 ggttacccacaaaacataatttggcaaatcgtggcattctatctgtggaggaacgattatgcgttgctggatgtgggattgtcgaagatgttactcattt 35540984  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  35540983 gtttttgtcttgtgcaacttttg 35540961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6050737 - 6050515
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  6050737 tcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagggatc 6050638  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| | |||||||    
T  6050637 ggttacctacaaaacttaatttggcaaattgtggcattctatctgtggaggagcggttctgcgttgctggatgtgggattgtcgaagatgttactcattt 6050538  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  6050537 gtttttgtcttgtgcaacttttg 6050515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 16917842 - 16917939
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggt 125  Q
    |||||||| |||||||||||||||||||| ||| | ||||| ||||||||||||||||||||  |||||||||| |||||||| |||  |||||||||    
T  16917842 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttggt 16917939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 47623111 - 47623192
Alignment:
Q  29 atatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| || ||||||||    
T  47623111 atatggaattaatttggcataaacaggtacctctcaaagtatctattcttgcttggcggcttttgagggaccgcttacctac 47623192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 43388474 - 43388392
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||||| |||||||||||||||||||| ||| | ||||| |||||||||||||||||| |  |||||||||| ||||||||    
T  43388474 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgattgttgagggatcgtttacctac 43388392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 213
Target Start/End: Original strand, 37191243 - 37191428
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaa 127  Q
    |||||||| ||||| |||||||||| ||| | | | ||||| | ||||||||||||||| ||  |||| ||||| |||||||| |||   || |||| |     
T  37191243 aatatggagttaatctggcataaactggttcatttaaaagtttatatccttgcttggcggctgttgagagatcgattacctactaaatccaacttggcag 37191342  T
Q  128 atcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcatttgtttttgtcttgt 213  Q
    |||| ||||||  |||||||||||| || || |||||  | |||||||||  ||| |||||||    |||| ||||||||||||||    
T  37191343 atcgtggcattacatctgtggaggatcgattttgtgtcacgggatgtgggcatgttgaagatgtgaatcatatgtttttgtcttgt 37191428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 28351821 - 28351776
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatcta 73  Q
    |||||||| |||||||||||||||| ||||||||| ||||| ||||    
T  28351821 aatatggagttaatttggcataaaccggtccctctgaaagtctcta 28351776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 19920235 - 19920457
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19920235 tcacaggagaagccccagttacaccatcatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatc 19920334  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19920335 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaagatgcttctcattt 19920434  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    |||||||||||||| || |||||    
T  19920435 gtttttgtcttgtgtaacttttg 19920457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2364411 - 2364189
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2364411 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagggatc 2364312  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||    
T  2364311 ggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactcattt 2364212  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  2364211 gtttttgtcttgtgcaacttttg 2364189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7312910 - 7312688
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||    
T  7312910 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtacctctcaaagtatctatccttgcttggcgactaatgagggatc 7312811  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| |||||| |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  7312810 ggttacctacaaaacttaatttggcaaatcgtggcattctgtctgtggaggagcggctttgtgtttctggatgtgggattgtcgaagatgtttctcattt 7312711  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  7312710 gtttttgtcttgtgcaacttttg 7312688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10323577 - 10323799
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10323577 tcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagggatc 10323676  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| || ||| ||||||||||||| ||| ||||||||||| ||| |||||||||||||||||||||||| | |||||||    
T  10323677 ggttacctacaaaacttaatttggcaactcgtggcattctatctggggatgagcggttatgcgttgctggatgtgggattgtcgaagatgttactcattt 10323776  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  10323777 gtttttgtcttgtgcaacttttg 10323799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 34332821 - 34333034
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  34332821 tcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcaacttctgagagatc 34332920  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    | ||||||||||||  |||||||| ||| || |||||| || || |||||| |||||| |||||||||||||||||||  || ||||||| |  ||||||    
T  34332921 gattacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcattt 34333020  T
Q  201 gtttttgtcttgtg 214  Q
    ||||||||||||||    
T  34333021 gtttttgtcttgtg 34333034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40930534 - 40930755
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||| || ||||| || || || ||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||     
T  40930534 tcacaggagcaacctcagttgcatcaaaacatggagttagtttgacataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagggatt 40930633  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    ||||||||||||||  |||||||| ||| || ||| || || || |||||| |||||| ||||||||||| |||||||  ||||||||||    ||||||    
T  40930634 ggttacctacaaaaaataatttggcaaaccgtggccttttacctttggaggcgcggttgtgtgtttctggttgtgggaacgtcgaagatgtcaatcattt 40930733  T
Q  201 gtttttgtcttgtgcaaatttt 222  Q
    ||||||||||||| ||| ||||    
T  40930734 gtttttgtcttgttcaactttt 40930755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 7032412 - 7032339
Alignment:
Q  41 tttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 114  Q
    ||||||| |||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  7032412 tttggcacaaacaggttcctctcaaaatttctatccttgcatggcgacttctgagggatcggttacctacaaaa 7032339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 29523778 - 29523860
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||||| |||||||||||||||||||| ||| | ||||| ||||||||||||||||||||  |||||||||| ||||||||    
T  29523778 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgtttacctac 29523860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 11203926 - 11203844
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||||| |||||||||||||||||||| ||| | ||||| ||||| ||||||||||||||  |||||||||| ||||||||    
T  11203926 aatatggagttaatttggcataaacaggttcctttaaaagtttctatacttgcttggcgactgttgagggatcgtttacctac 11203844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 33496653 - 33496572
Alignment:
Q  29 atatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    ||||||| |||||||||||||||||||| ||| | ||||| |||||| |||||||||||||  |||||||||| ||||||||    
T  33496653 atatggagttaatttggcataaacaggttcctttaaaagtttctatcattgcttggcgactgttgagggatcgtttacctac 33496572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 12342259 - 12342340
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||||| |||||||||||||||||||| | | | ||||| ||||||||||||||||||||  |||||||||| ||||||||    
T  12342259 aatatggagttaatttggcataaacaggttctt-taaaagtttctatccttgcttggcgactgttgagggatcgtttacctac 12342340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 7031059 - 7031147
Alignment:
Q  37 ttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggt 125  Q
    |||||||||||||||||||| ||| | ||| | ||||||||||||||||| ||  |||||||||| |||||||| |||  |||||||||    
T  7031059 ttaatttggcataaacaggttcctttaaaactttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggt 7031147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 26771022 - 26771104
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||||| ||||| |||||||||||||  ||||| ||||| ||||| ||| ||||||| ||| |||||||||| ||||||||    
T  26771022 aatatggagttaatgtggcataaacaggctcctcttaaagtctctattcttacttggcggcttttgagggatcgtttacctac 26771104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 963186 - 963292
Alignment:
Q  18 gttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaactt 117  Q
    |||||| || |||||||| || |||||||| |||||||| ||| | ||||| |||||  ||||||||||  | |||||||| ||||||||||| ||||      
T  963186 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 963285  T
Q  118 aatttgg 124  Q
    |||||||    
T  963286 aatttgg 963292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 36801108 - 36801190
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||||| ||||||| ||||||| |||| ||  | ||||| | |||||||||||||| ||| ||||||||||| ||||||||    
T  36801108 aatatggagttaatttagcataaataggttcccttaaaagtttatatccttgcttggcaactgctgagggatcgtttacctac 36801190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 2755959 - 2755867
Alignment:
Q  18 gttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||| || |||||||| || |||||||| |||||||| ||| | ||||| |||||  ||||||||||  | |||||||| |||||||||||    
T  2755959 gttacatcaaaatatggagttgatttggcacaaacaggtacctttgaaagtgtctatatttgcttggcgtttgctgagggaccggttacctac 2755867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 15312704 - 15312617
Alignment:
Q  14 cccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcg 101  Q
    |||| ||||| || ||| |||| |||||||||||||||||||| ||||| ||||| | |||  |||||||| |||| |||||| ||||    
T  15312704 cccatttacatcaaaatttggagttaatttggcataaacaggtacctctaaaagtctatatatttgcttggtgactgctgaggaatcg 15312617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 16179046 - 16178952
Alignment:
Q  37 ttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaaatcg 131  Q
    |||||||||||||||||||| ||||| |||||||||||  |||| ||||| ||  ||| ||||||  ||||||| |||   ||||||| ||||||    
T  16179046 ttaatttggcataaacaggtacctcttaaagtatctatttttgcgtggcgcctgatgaaggatcgtctacctactaaagagaatttggcaaatcg 16178952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 35214404 - 35214462
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcg 86  Q
    |||||||| ||||| |||||||||||||| ||| | ||||| |||||||||| ||||||    
T  35214404 aatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgtttggcg 35214462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 12825333 - 12825111
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||    
T  12825333 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaagttcctctcaaagtatgtatccttgcttggcgacttctgagggatc 12825234  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12825233 ggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcattt 12825134  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  12825133 gtttttgtcttgtgcaacttttg 12825111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30732320 - 30732542
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  30732320 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatctttgcttggcgacttctgagggatc 30732419  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30732420 ggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcattt 30732519  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||| ||| |||||    
T  30732520 gtttttgtcttgtacaacttttg 30732542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27117167 - 27117389
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  27117167 tcacaggagcagatccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggacc 27117266  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    ||||||| |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||    
T  27117267 ggttacccacaaaacttaatttggtaaaccgtggcattctatctatggaggagcggttatgtgtttctggctgtgggaatgtcgaagatgtttctcattt 27117366  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  27117367 gtttttgtcttgtgcaacttttg 27117389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42513854 - 42513632
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  42513854 tcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagggatc 42513755  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||    
T  42513754 ggttacctacaaaacttaatttggcaaatcgtgacattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactcattt 42513655  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
     |||||||||||||||| |||||    
T  42513654 ttttttgtcttgtgcaacttttg 42513632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 12820035 - 12820177
Alignment:
Q  81 ttggcgacttctgagggatcggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggatt 180  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12820035 ttggcgacttatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggatt 12820134  T
Q  181 gtcgaagatgcttctcatttgtttttgtcttgtgcaaattttg 223  Q
    ||||||||||  ||||||||||||||||||||||||| |||||    
T  12820135 gtcgaagatgtctctcatttgtttttgtcttgtgcaacttttg 12820177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 23238518 - 23238305
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||| |||| ||||    
T  23238518 tcacaggagcaaccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtttctatccttgcttggagacttttgagagatc 23238419  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||| |||  |||||||| ||| || |||||| || || |||||| |||||| |||||||||||||||||||  || ||||||| |  ||||||    
T  23238418 ggttacctacgaaaagtaatttggcaaaccgtggcattttagctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcattt 23238319  T
Q  201 gtttttgtcttgtg 214  Q
    ||||||||||||||    
T  23238318 gtttttgtcttgtg 23238305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28535681 - 28535902
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||| |||||||| || || ||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  28535681 tcacaggagcagcctcagttacatcaaaacatggagttaatttggcatacacaggttcctctcaaagtttctatccttgcttggcgacttctgagggatc 28535780  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    ||||||||||||||  |||||||| ||| || |||||| || || |||||| || | | ||||||||||| ||||||| ||| |||||||    ||||||    
T  28535781 ggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagatgtgtgtttctggttgtgggaatgtagaagatgtcgatcattt 28535880  T
Q  201 gtttttgtcttgtgcaaatttt 222  Q
    ||||||||||||||||| ||||    
T  28535881 gtttttgtcttgtgcaactttt 28535902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 8228148 - 8227947
Alignment:
Q  13 ccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaa 112  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |||| |||||||||||||| |    
T  8228148 ccccagttacaccataatatggagttaatttgacataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacga 8228049  T
Q  113 aacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcatttgtttttgtcttg 212  Q
    ||  |||||||| ||| || | |||| || || |||||| |||||| |||||||||||||||| ||  || ||||||| |  ||||||||||||||||||    
T  8228048 aaagtaatttggcaaaccgtgacattttacctttggaggcgcggttgtgtgtttctggatgtgagaacgttgaagatgttaatcatttgtttttgtcttg 8227949  T
Q  213 tg 214  Q
    ||    
T  8227948 tg 8227947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35983797 - 35984018
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||| |||||||| || || ||||| |||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  35983797 tcacaggagcagcctcagttacatcaaaacatggagttaatttggcttacacaggttcctctcaaagtatctatccttgcttggcgacttctgaggaatc 35983896  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    ||||||||||||||  |||||||| ||| |  | |||| || || |||||| |||||| ||||||| ||| ||||||| ||| |||| ||    ||||||    
T  35983897 ggttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttttggttgtgggaatgtagaagttgtcaatcattt 35983996  T
Q  201 gtttttgtcttgtgcaaatttt 222  Q
    ||||||||||||||||| ||||    
T  35983997 gtttttgtcttgtgcaactttt 35984018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 178
Target Start/End: Complemental strand, 42928262 - 42928088
Alignment:
Q  4 caggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggt 103  Q
    ||||| |||||||||||||| |  |||||||| ||||||||| |||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||    
T  42928262 caggaacagccccagttacatccaaatatggagttaatttggtataaacaggttcctctcaaagtctctatccttgtttggcggcttctgagggatcggt 42928163  T
Q  104 tacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtggga 178  Q
    || ||||||||  |||||||  |||  | |||||| || |  |||||| |||||| ||||| |||||||| ||||    
T  42928162 taactacaaaaaataatttgacaaactgtggcattttacccttggaggtgcggttgtgtgtctctggatgcggga 42928088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 19255155 - 19255265
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaa 127  Q
    |||||||| |||||||||||||||||| |  ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||  |||||||| ||    
T  19255155 aatatggagttaatttggcataaacagatttctctcaaagtatctatccttgcttggcggtttctgagggatcggttacctacaaaaaataatttggcaa 19255254  T
Q  128 atcgaggcatt 138  Q
    || | ||||||    
T  19255255 attgtggcatt 19255265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 31641645 - 31641523
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||| || ||||| || || ||||| ||||||||||||| |||||| ||||| ||||| ||||||||||| ||| |||| ||||||||||    
T  31641645 tcacaggagcagcctcacttacatcaaaacatggagttaatttggcatacacaggttcctct-aaagtttctatccttgcatggagactactgagggatc 31641547  T
Q  101 ggttacctacaaaacttaatttgg 124  Q
    ||||||||||||||  ||||||||    
T  31641546 ggttacctacaaaaaataatttgg 31641523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 3418781 - 3418695
Alignment:
Q  137 ttctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcatttgtttttgtcttgtgcaaattttg 223  Q
    |||||||||||||||| || ||||| ||| |||||||||||||||||||||||| | |||||||||||||||||||||||| |||||    
T  3418781 ttctatctgtggaggaacgattatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttg 3418695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 25857457 - 25857554
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggt 125  Q
    |||||||| |||||||||||||||||||| ||| | ||||| ||||||||||||||||||||  |||||||||| |||||||| |||  |||||||||    
T  25857457 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttggt 25857554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 10776870 - 10776676
Alignment:
Q  29 atatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaaa 128  Q
    ||||||| |||||||||||||||||||| ||  | ||||| |||||||||||||||||||| ||||||||||| |||||||| |||   ||||||||       
T  10776870 atatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgagggatcgtttacctactaaatcaaatttggtggc 10776771  T
Q  129 tcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcatttgtttttgtcttgtgcaaattttg 223  Q
     || || ||| ||||||||||  | ||||| ||||| || |||||||||   || |||||||    |||||| |||||||||||| ||| |||||    
T  10776770 acgtgggattatatctgtggaaaatcggttttgtgtatcgggatgtgggcaagttgaagatgtgaatcatttatttttgtcttgtccaatttttg 10776676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 27767149 - 27767063
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 114  Q
    |||||||| |||||||||||||||||||| ||| | ||||| | ||||||||||||||||||  |||||||||| ||||||||||||    
T  27767149 aatatggagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctacaaaa 27767063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 8300215 - 8300312
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggt 125  Q
    |||||||| |||||||||||||||||||| ||| | ||||| |||||||||| |||||||||  |||||||||| |||||||| |||  |||||||||    
T  8300215 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagggatcgcttacctactaaatctaatttggt 8300312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 223
Target Start/End: Original strand, 33385407 - 33385602
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaa 127  Q
    |||||||| |||||||||||||||||||| ||  | ||||| ||||||||||||||||||||  |||||||||| |||||||| |||   ||||||||      
T  33385407 aatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgttgagggatcgtttacctactaaatcaaatttggtgg 33385506  T
Q  128 atcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcatttgtttttgtcttgtgcaaattttg 223  Q
      || || ||| ||||||||||  | ||||| ||||| || |||||||||   || |||||||    |||||| |||||||||||| ||| |||||    
T  33385507 cacgtggaattatatctgtggaaaatcggttttgtgtatcgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttg 33385602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 33169775 - 33169636
Alignment:
Q  18 gttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaactt 117  Q
    |||||| || |||||||| || |||||||| |||||||| ||| | ||||| |||||  ||||||||||  | |||||||| ||||||||||| ||||      
T  33169775 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 33169676  T
Q  118 aatttggtaaatcgaggcattctatctgtggaggagcggt 157  Q
    ||||||| || ||| ||  |  ||||| ||||||||||||    
T  33169675 aatttggcaagtcgtggggtcttatctttggaggagcggt 33169636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 18359125 - 18359207
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||||| ||||| | |||||||||||| ||| | ||||| || ||||||||||||||  |  |||||||||| ||||||||    
T  18359125 aatatggagttaatctagcataaacaggttcctttaaaagtttcaatccttgcttggcggttgttgagggatcgtttacctac 18359207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 26073023 - 26072917
Alignment:
Q  4 caggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggt 103  Q
    ||||| |||||||| || || || ||| |||| ||||||||||||||| | || ||| | |||||  ||||| ||| |||||||||  |||||||||| |    
T  26073023 caggaacagccccatttgcatcaaaatttggagttaatttggcataaatatgttcctttgaaagtccctatctttgtttggcgactgttgagggatcgat 26072924  T
Q  104 tacctac 110  Q
    |||||||    
T  26072923 tacctac 26072917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 27165958 - 27166071
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||| || ||| | ||||| || |||||||| |||||||||||  ||||||| ||||| ||||| |||||| | | |||||||   |||| |||||    
T  27165958 tcacaggaacaacccaatttacatcaaaatatggaattaatttggcaccaacaggtacctctaaaagtctctatcttcgtttggcgaacgctgaaggatc 27166057  T
Q  101 ggttacctacaaaa 114  Q
    | ||||||| ||||    
T  27166058 gtttacctataaaa 27166071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4552303 - 4552081
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  4552303 tcacaggagcagccccagttacaccataatatggacttaatttggcataaataggttcctcttaaagtatctatccttgcttggcgacttctgagggatc 4552204  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  4552203 ggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaaaatgtttctcattt 4552104  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  4552103 gtttttgtcttgtgcaacttttg 4552081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 41207123 - 41206928
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaa 127  Q
    |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||  |||||||| ||    
T  41207123 aatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggcggcttctgagggatcggttacctacaaaaaataatttggcaa 41207024  T
Q  128 atcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcatttgtttttgtcttgtgcaaattttg 223  Q
    |||| |||||| |  |  |||||| |||||| |||||  ||||||| |||   || |||||||    ||||||||| ||||||||| ||| |||||    
T  41207023 atcgtggcattattcccttggaggcgcggttgtgtgtcactggatgcgggcacgttgaagatgtcaatcatttgttcttgtcttgtccaacttttg 41206928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 15917761 - 15917566
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaa 127  Q
    ||||| || ||||||| ||||||| |||| ||||| ||||| | ||||||||||||| |||| ||||||||||| |||||||||||| ||||||||| ||    
T  15917761 aatattgagttaatttcgcataaataggttcctctgaaagtctgtatccttgcttggggactgctgagggatcgtttacctacaaaagttaatttggcaa 15917662  T
Q  128 atcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcatttgtttttgtcttgtgcaaattttg 223  Q
    |||| || ||| |  || |||| | |||||| |||||  |||| ||||||  ||| |||||||    |||| |||||||||||||| ||| |||||    
T  15917661 atcgtggtattattcctttggaagtgcggttgtgtgtcactggttgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccaacttttg 15917566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 12645643 - 12645459
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaa 127  Q
    |||||||| ||||||||||||||||||||  |||| ||||| || |||||||||||||| ||  |||||||||| ||||||||||||   ||||||  |     
T  12645643 aatatggagttaatttggcataaacaggtttctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttgacag 12645544  T
Q  128 atcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcatttgtttttgtcttg 212  Q
    ||||  | |||||| || ||||||  ||||| |||||| | || ||||||  ||| |||||||   |||||||||||||||||||    
T  12645543 atcgcagaattctacctttggaggctcggttttgtgttacagggtgtgggcatgttgaagatgtgactcatttgtttttgtcttg 12645459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 28252825 - 28252745
Alignment:
Q  30 tatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||| |||||||||| ||||||||    
T  28252825 tatggaattaatttggcataaacaggtacctctaaaagtatctattcttgcttggcggcttttgagggatcgcttacctac 28252745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 14439857 - 14439738
Alignment:
Q  30 tatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaaat 129  Q
    |||||| ||||| |||||||||||||| ||| | ||||| |||||| | ||||| |||||  |||||||||| |||||||| |||   ||||||||| |     
T  14439857 tatggagttaatctggcataaacaggttcctttaaaagtttctatcttggcttgacgactgttgagggatcgtttacctactaaatcaaatttggtagaa 14439758  T
Q  130 cgaggcattctatctgtgga 149  Q
    || || ||||||||||||||    
T  14439757 cgtgggattctatctgtgga 14439738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 17764995 - 17765077
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||||| ||||| |||||||||||||  ||||| ||||| ||||| ||||||||||| ||  |||||||||  ||||||||    
T  17764995 aatatggagttaatatggcataaacaggctcctcttaaagtctctattcttgcttggcggctattgagggatcatttacctac 17765077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 105849 - 106071
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  105849 tcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagggatc 105948  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||    
T  105949 ggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactcattt 106048  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  106049 gtttttgtcttgtgcaacttttg 106071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7924520 - 7924298
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  7924520 tcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagggatc 7924421  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||    
T  7924420 ggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactcattt 7924321  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  7924320 gtttttgtcttgtgcaacttttg 7924298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8299937 - 8299715
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8299937 tcacaggagtagccccaattacaccataatttggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagggatc 8299838  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | |||||||    
T  8299837 ggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcgattatgtgttgctggatgtgggattgtcgaagatgttactcattt 8299738  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||| ||||||| |||||    
T  8299737 gtttttgtcctgtgcaacttttg 8299715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 172237 - 172015
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  172237 tcacaggagcagaaccagttacaccataaaatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggacc 172138  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    ||||||| |||||||||||||||||||| || | |||||||||| ||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||    
T  172137 ggttacccacaaaacttaatttggtaaaccgtgacattctatctatggaggagcggttatgtgtttctggctgtggtaatgtcgaagatgtttctcattt 172038  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  172037 gtttttgtcttgtgcaacttttg 172015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 13396522 - 13396309
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||    
T  13396522 tcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaagttcctctcaaagtatctatccttgcttggcgactcctgagagatc 13396423  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    ||||||||||||||  |||||||| ||| || |||||| || || |||||| |||||| |||||||||||||||||||  || ||||||| |  ||||||    
T  13396422 ggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcattt 13396323  T
Q  201 gtttttgtcttgtg 214  Q
    ||||||||||||||    
T  13396322 gtttttgtcttgtg 13396309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 32266698 - 32266485
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||| ||||| || ||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||    
T  32266698 tcacaagagcaaccacagttacaccataatttggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatc 32266599  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||| |||  |||||||| ||| || |||||| || || |||||| |||||| |||||||||||||||||||  || ||||||| |  ||||||    
T  32266598 ggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcattt 32266499  T
Q  201 gtttttgtcttgtg 214  Q
    ||||||||||||||    
T  32266498 gtttttgtcttgtg 32266485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 41665375 - 41665588
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| | || || ||||    
T  41665375 tcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgattcctaagagatc 41665474  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
     |||||||||||||  |||||||| ||| |  | |||| || || |||||| |||||| |||||||||||||||||||  || ||||||| |  ||||||    
T  41665475 agttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcattt 41665574  T
Q  201 gtttttgtcttgtg 214  Q
    ||||||||||||||    
T  41665575 gtttttgtcttgtg 41665588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9922735 - 9922514
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||| || ||||| || ||  |||| ||||||||||||| |||||| ||||||||||| ||||||||||| || ||||||||||||||||    
T  9922735 tcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatccttgcatgacgacttctgagggatc 9922636  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    ||||||||||||||  |||||||| ||| || |||||| || || |||||| |||| | ||||||||||| ||||||| ||| |||||||    ||||||    
T  9922635 ggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctggttgtgggaatgtagaagatgtcaatcattt 9922536  T
Q  201 gtttttgtcttgtgcaaatttt 222  Q
    ||||||||||||||||| ||||    
T  9922535 gtttttgtcttgtgcaactttt 9922514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 20824403 - 20824306
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggt 125  Q
    |||||||| |||||||||||||||||||| ||| | ||||| ||||||||||||||||||||  |||||||||| |||||||| |||  |||||||||    
T  20824403 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttggt 20824306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 17699589 - 17699507
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||||| |||||||||||||||||||| ||  | ||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  17699589 aatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgagggatcgtttacctac 17699507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 2170449 - 2170328
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaa 127  Q
    |||||||| ||||| |||||||||||||| ||| | ||||| |||||||||||||||||||   |||||||||| |||||||| |||   |||||||||     
T  2170449 aatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgcttggcgaccgttgagggatcgtttacctactaaatcaaatttggtag 2170350  T
Q  128 atcgaggcattctatctgtgga 149  Q
    | || || ||||||||||||||    
T  2170349 aacgtgggattctatctgtgga 2170328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 13200230 - 13200046
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaa 127  Q
    |||||||| ||| |||||||||||||||| ||||| ||||| || |||||||||||||  ||  |||||||||| ||||||||||||   ||||||| |     
T  13200230 aatatggagttagtttggcataaacaggttcctctaaaagtttcaatccttgcttggcagctattgagggatcgtttacctacaaaatacaatttggcag 13200131  T
Q  128 atcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcatttgtttttgtcttg 212  Q
    | ||  | |||||| || ||||||  ||||| |||||| |||| ||||||  ||| |||||||   ||||| |||||||||||||    
T  13200130 agcgcagaattctacctatggaggctcggttttgtgttactgggtgtgggcatgttgaagatgtgactcatatgtttttgtcttg 13200046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 20497052 - 20496996
Alignment:
Q  167 ctggatgtgggattgtcgaagatgcttctcatttgtttttgtcttgtgcaaattttg 223  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||| |||||    
T  20497052 ctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttg 20496996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 37434239 - 37434157
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||||| ||||||||||||||||| || ||| | ||||| ||||| ||||||||||||||  |||||||||| ||||||||    
T  37434239 aatatggagttaatttggcataaacatgttcctttaaaagtctctattcttgcttggcgactgttgagggatcgtttacctac 37434157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 212
Target Start/End: Complemental strand, 2529958 - 2529809
Alignment:
Q  63 caaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgt 162  Q
    |||||| || |||||||||||||| ||  |||||||||| ||||||||||||   ||||||||| |||| || ||||||  | ||||||  ||||| |||    
T  2529958 caaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttggtagatcgtggaattctacttttggaggctcggttttgt 2529859  T
Q  163 gtttctggatgtgggattgtcgaagatgcttctcatttgtttttgtcttg 212  Q
    ||| | || ||||||  ||| |||||||   |||||||||||||||||||    
T  2529858 gttacagggtgtgggcatgttgaagatgtgactcatttgtttttgtcttg 2529809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 34137011 - 34137078
Alignment:
Q  43 tggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||| ||| ||| |||||| ||||||||    
T  34137011 tggcataaacaggtacctctcaaagtctctattcttgcttggcggcttatgatggatcgtttacctac 34137078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 43270557 - 43270362
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaa 127  Q
    |||||||| || || |||||||||||||| ||| | ||||| ||||||||| ||||||||||  ||| |||||| || ||||| |||   |||||||||     
T  43270557 aatatggagttcatctggcataaacaggttcctttaaaagtttctatccttacttggcgactgttgaaggatcgtttgcctactaaaacaaatttggtag 43270458  T
Q  128 atcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcatttgtttttgtcttgtgcaaattttg 223  Q
    | || |  |||||||||||||| |  ||||| |||||  | || ||||||   || |||||||    ||||||||||||||||||| ||| |||||    
T  43270457 aacgtgagattctatctgtggaagctcggttttgtgtaacgggttgtgggcaggttgaagatgtgaatcatttgtttttgtcttgtccaatttttg 43270362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 5181777 - 5181677
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaa 127  Q
    ||||||||  ||||||||||||||||||| ||||| ||||| | ||| |||| |||||| |  ||||||||||  ||||| ||||||  ||||||| |||    
T  5181777 aatatggagataatttggcataaacaggtgcctctaaaagtctatattcttgtttggcggcggctgagggatcatttaccaacaaaagataatttgataa 5181678  T
Q  128 a 128  Q
    |    
T  5181677 a 5181677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4938134 - 4938356
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  4938134 tcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagggatc 4938233  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||    
T  4938234 ggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactcattt 4938333  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  4938334 gtttttgtcttgtgcaacttttg 4938356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11277258 - 11277479
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||    
T  11277258 tcacaggagcaaccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagatc 11277357  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||| |||  |||||||| ||| || |||||| || || |||||| |||||| |||||||||||||||||||  || ||||||| |  ||||||    
T  11277358 ggttacctacgaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcattt 11277457  T
Q  201 gtttttgtcttgtgcaaatttt 222  Q
    ||||| |||||||| |||||||    
T  11277458 gttttagtcttgtgtaaatttt 11277479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 47877117 - 47876896
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||||||||||||||| || |||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  47877117 tcacaggagcagccccagttacatcaaaatagggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagagatc 47877018  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
     |||||||||||||  |||||||| ||| || |||||| || || |||||| |||||| |||||||||||||| ||||  || ||||||| |  ||||||    
T  47877017 agttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgcgggaacgttgaagatgttaatcattt 47876918  T
Q  201 gtttttgtcttgtgcaaatttt 222  Q
    ||||||||||||| ||| ||||    
T  47876917 gtttttgtcttgttcaactttt 47876896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 29968109 - 29967896
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||  ||||| |||| ||||    
T  29968109 tcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttgaggacttttgagagatc 29968010  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||| |||  |||||||| ||| |  |||||| || || |||||| |||||| |||||||||||||||||||  || ||||||| |  ||||||    
T  29968009 ggttacctacgaaaagtaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcattt 29967910  T
Q  201 gtttttgtcttgtg 214  Q
    ||||||||||||||    
T  29967909 gtttttgtcttgtg 29967896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 235443 - 235666
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||||||||||||||| || |||||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||    
T  235443 tcacaggagcagccccagttacatcaaaatatggagttaatttggcataaacaggttcatctcaaagtctctatccttgcttggcgacttctgagggatc 235542  T
Q  101 ggttacctacaaaactta--atttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcat 198  Q
    ||||||||||||||   |  |||||| ||| || |||||| || || |||||| |||||| ||||||||||| || | ||  || ||||||| |  ||||    
T  235543 ggttacctacaaaaaaaatcatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggttgcgagaacgttgaagatgttaatcat 235642  T
Q  199 ttgtttttgtcttgtgcaaatttt 222  Q
    ||||||||||||||| ||| ||||    
T  235643 ttgtttttgtcttgttcaactttt 235666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17720769 - 17720548
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||| || ||||| || ||  |||| ||||||||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||||    
T  17720769 tcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatc 17720670  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    ||||||||||||||  |||||||| ||| || |||||| || || |||||| |||| | ||||||||| | ||||||| ||  ||||||| |  ||||||    
T  17720669 ggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctagttgtgggaatgaagaagatgttaatcattt 17720570  T
Q  201 gtttttgtcttgtgcaaatttt 222  Q
    ||||||||||||||||| ||||    
T  17720569 gtttttgtcttgtgcaactttt 17720548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 37919678 - 37919465
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||||||||| ||||| ||| ||||| | ||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| |||     
T  37919678 tcacaggagcagccccaattacatcatcatatgaagttaatttggtataaacaggttcctctcaaagtatctatccttgcttggcgactcctgagagatt 37919579  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    ||||||||||||||  |||||||| ||| ||  ||||| || || |||||| |||||| ||||||||| | |||||||  || ||||||| |  ||||||    
T  37919578 ggttacctacaaaaaataatttggcaaaccgttgcattttacctttggaggcgcggttgtgtgtttctagttgtgggaacgttgaagatgttaatcattt 37919479  T
Q  201 gtttttgtcttgtg 214  Q
     |||||||||||||    
T  37919478 atttttgtcttgtg 37919465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 31177421 - 31177533
Alignment:
Q  111 aaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcatttgtttttgtct 210  Q
    |||||||||||||  |||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||    
T  31177421 aaaacttaatttgacaaatcgtggcattctatatgtggaggagcggttatgtgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtct 31177520  T
Q  211 tgtgcaaattttg 223  Q
    ||||||| |||||    
T  31177521 tgtgcaacttttg 31177533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 18532735 - 18532614
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaa 127  Q
    |||||||| ||||| | |||||||||||| ||| | ||||| | ||||||||||||||||||  |||||||||| |||||||| |||   | |||||||     
T  18532735 aatatggagttaatctcgcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctactaaatcaattttggtag 18532636  T
Q  128 atcgaggcattctatctgtgga 149  Q
    | || || ||||||||||||||    
T  18532635 aacgtggaattctatctgtgga 18532614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 213
Target Start/End: Complemental strand, 25619566 - 25619381
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaa 127  Q
    |||||||| ||||| |||||||||||||| ||| | ||||| |||||||||||||||||  |  ||||||| || |||||||| |||   || |||| |     
T  25619566 aatatggagttaatatggcataaacaggttcctttaaaagtttctatccttgcttggcggttgttgagggaacgattacctactaaatccaacttggcag 25619467  T
Q  128 atcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcatttgtttttgtcttgt 213  Q
    |||| ||||||  |||||||||||| || || |||||  | |||||||||  ||| |||||||    |||| ||||||||||||||    
T  25619466 atcgtggcattgcatctgtggaggaccgattttgtgtcacaggatgtgggcatgttgaagatgtgaatcatatgtttttgtcttgt 25619381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 37254865 - 37254783
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||||| ||||| ||||||||||||||  || | ||||| || ||||||||||||||  |  |||||||||| ||||||||    
T  37254865 aatatggagttaatctggcataaacaggttactttaaaagtttcaatccttgcttggcggttgttgagggatcgtttacctac 37254783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 23642597 - 23642819
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  23642597 tcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagggatc 23642696  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||    
T  23642697 ggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactcattt 23642796  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  23642797 gtttttgtcttgtgcaacttttg 23642819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 47418938 - 47418716
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47418938 tcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagggatc 47418839  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||| ||| | |||||||||||||||||||||| | |||||||    
T  47418838 ggttacctacaaaacttaatttggcaactcgtggcattctatctggggaggagcggttatgcgttgcaggatgtgggattgtcgaagatgttactcattt 47418739  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  47418738 gtttttgtcttgtgcaacttttg 47418716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 13270897 - 13271119
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  13270897 tcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagggatc 13270996  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | || ||||    
T  13270997 ggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgagttactggatgtgggattgtcgaagatgttactaattt 13271096  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
     |||||||||||||||| |||||    
T  13271097 atttttgtcttgtgcaacttttg 13271119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 47685901 - 47686122
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||    
T  47685901 tcacaagagcagcccaagttacaccataatctggacttaatttgacataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagatc 47686000  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    ||||||||||||||| |||||||| ||| || |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||    
T  47686001 ggttacctacaaaacataatttggcaaaccgtggcattttatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaagatgtttctcgttt 47686100  T
Q  201 gtttttgtcttgtgcaaatttt 222  Q
    ||||||||||||||||| ||||    
T  47686101 gtttttgtcttgtgcaactttt 47686122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1828546 - 1828768
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||  || | |||     
T  1828546 tcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagactattgcgagata 1828645  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    ||||||||||||||  |||||||| ||| || |||||| || || |||||| |||||| ||||||||||| ||||||| ||| ||||||| |  ||||||    
T  1828646 ggttacctacaaaaactaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttgatcattt 1828745  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  1828746 gtttttgtcttgtgcaacttttg 1828768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 15740351 - 15740143
Alignment:
Q  5 aggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggtt 104  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || | ||||||||    
T  15740351 aggagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgcgagatcggtt 15740252  T
Q  105 acctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcatttgttt 204  Q
    ||||||||||  |||||||  ||  || |||||| || || |||||| |||||| ||||||||||| ||||||| |||  |||||| |  ||||||||||    
T  15740251 acctacaaaaaataatttgacaagccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgggaatgttaaagatgttaatcatttgttt 15740152  T
Q  205 ttgtcttgt 213  Q
    |||||||||    
T  15740151 ttgtcttgt 15740143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 19755401 - 19755185
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||| ||||||||||| || || ||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||    
T  19755401 tcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgagagatc 19755302  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctat---ctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctca 197  Q
    ||||||||||||||  |||||||| ||| || | |||| |||   || |||||| |||||| |||||||||||||||||||  || ||||||| |  |||    
T  19755301 ggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaagatgttaatca 19755202  T
Q  198 tttgtttttgtcttgtg 214  Q
    |||||||||||||||||    
T  19755201 tttgtttttgtcttgtg 19755185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 19784405 - 19784621
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||| ||||||||||| || || ||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||    
T  19784405 tcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgagagatc 19784504  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctat---ctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctca 197  Q
    ||||||||||||||  |||||||| ||| || | |||| |||   || |||||| |||||| |||||||||||||||||||  || ||||||| |  |||    
T  19784505 ggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaagatgttaatca 19784604  T
Q  198 tttgtttttgtcttgtg 214  Q
    |||||||||||||||||    
T  19784605 tttgtttttgtcttgtg 19784621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7404047 - 7403826
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||||||||||||||| || |||||| | ||||||||||||||||| || | | ||||||| |||||||||||||||||||||||||||||||    
T  7404047 tcacaggagcagccccagttacatcaaaatatgaagttaatttggcataaacaagttcatttcaaagtctctatccttgcttggcgacttctgagggatc 7403948  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    ||||||||||||||   ||||||| ||| || |||||| ||  | |||||| |||||| ||||| |||||||| ||||  || |||||||    ||||||    
T  7403947 ggttacctacaaaaaagaatttggcaaaccgtggcattttacgtttggaggcgcggttgtgtgtctctggatgcgggaacgttgaagatgtcaatcattt 7403848  T
Q  201 gtttttgtcttgtgcaaatttt 222  Q
    ||||||||||||| ||| ||||    
T  7403847 gtttttgtcttgtccaactttt 7403826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 159842 - 159919
Alignment:
Q  146 tggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcatttgtttttgtcttgtgcaaattttg 223  Q
    ||||||| || ||||| ||| |||||||||||||||||||||||| | |||||||||||||||||||||||| |||||    
T  159842 tggaggaacgattatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttg 159919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 12697920 - 12697838
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||| | |||||||||||||||||||| ||| | ||||| ||||||||||||||||||||  |||||||||| ||||||||    
T  12697920 aatatgaaattaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgtttacctac 12697838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 45472742 - 45472824
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||||| |||||||||||||||||||| ||| | ||||| |||||||||| |||||||||  |||||||||| ||||||||    
T  45472742 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagggatcgtttacctac 45472824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 55725719 - 55725805
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 114  Q
    |||||||| ||||||||||||||||| || ||||| ||||| || |||||||||||||| ||  |||||||||| ||||||||||||    
T  55725719 aatatggagttaatttggcataaacaagttcctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaa 55725805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 11587233 - 11587313
Alignment:
Q  30 tatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||| ||||||||||||||| || | ||| ||||||||||||| ||||||||||| ||||||||| |||| ||||||||    
T  11587233 tatggagttaatttggcataaatagatacctatcaaagtatctattcttgcttggcggcttctgaggaatcgtttacctac 11587313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 8361207 - 8361126
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttaccta 109  Q
    |||||||| |||||||||||||||||||| ||  | ||||| |||||||||| ||||||||| |||||| |||| |||||||    
T  8361207 aatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgtttggcgactgctgaggaatcgtttaccta 8361126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 20002832 - 20002750
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||||| |||||||||||||||||||| | | | ||||| |||||| |||||||||| ||  |||||||||| ||||||||    
T  20002832 aatatggagttaatttggcataaacaggttcttttaaaagtttctatcattgcttggcggctgttgagggatcgtttacctac 20002750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11211 - 11433
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  11211 tcacaggagcagacccagctacaccataatctggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctcagggatc 11310  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || ||||||    
T  11311 ggttacctacaaaacttaatttggcaaaccgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaaaatgtttttcattt 11410  T
Q  201 gtttttgtcttgtgcaaattttg 223  Q
    ||||||||||||||||| |||||    
T  11411 gtttttgtcttgtgcaacttttg 11433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 12734240 - 12734037
Alignment:
Q  20 tacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaa 119  Q
    |||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12734240 tacatcataatatggatttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaa 12734141  T
Q  120 tttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcatttgtttttgtcttgtgcaaat 219  Q
    ||||||||  || |||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| |    
T  12734140 tttggtaacccgtggcattctatctctggaggagcggttatgtgtttctagatgtgggaatgtcgaagatgtttctcatttgtttttgtcttgtgcaact 12734041  T
Q  220 tttg 223  Q
    ||||    
T  12734040 tttg 12734037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 2553771 - 2553558
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||  ||||    
T  2553771 tcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatc 2553672  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    ||||||||||||||  |||||||| ||| || |||||| || || |||||| || ||| |||||||||||||||||||  || ||||||| |  ||||||    
T  2553671 ggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcattt 2553572  T
Q  201 gtttttgtcttgtg 214  Q
    ||||||||||||||    
T  2553571 gtttttgtcttgtg 2553558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 18651240 - 18651417
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||||||||||||| | || |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  18651240 tcacaggagcagccccagttagatcaaaatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggcgacttctgagggatc 18651339  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtggga 178  Q
    ||||||||||||||  |||||||| ||| || || ||| || || |||| | |||||| ||||| |||||||| ||||    
T  18651340 ggttacctacaaaaaataatttggaaaaccgtgggattttacctttggatgcgcggttgtgtgtctctggatgcggga 18651417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 24767430 - 24767651
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||||||| ||||||| || |||||||| ||||||| |||||||||||| ||| ||||||| |||||||||||||| |||||||| |||||||    
T  24767430 tcacaggagcagccctagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttgacgacttcttagggatc 24767529  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    ||||||||||||||  |||||||| |||||| |||||| || || |||||| |||||| ||||||| ||| || ||||  || ||||||| |  | ||||    
T  24767530 ggttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaacgttgaagatgttaataattt 24767629  T
Q  201 gtttttgtcttgtgcaaatttt 222  Q
    ||||||||||||| ||| ||||    
T  24767630 gtttttgtcttgtccaactttt 24767651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 21168333 - 21168220
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| |||||| ||||| ||   ||||    
T  21168333 tcacaggagcagccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtatctatcctagcttggagacttttgcaagatc 21168234  T
Q  101 ggttacctacaaaa 114  Q
    | ||||||||||||    
T  21168233 gattacctacaaaa 21168220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 17579114 - 17579211
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggt 125  Q
    |||||||| |||||||||||||||||||| ||| | ||||| ||||||||||||||||||||  |||||||||| |||||||| |||  |||||||||    
T  17579114 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttggt 17579211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 17573688 - 17573785
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggt 125  Q
    |||||||| |||||||||||||||||||| ||| | ||||  ||||||||||||||||||||  |||||||||| |||||||| |||  |||||||||    
T  17573688 aatatggagttaatttggcataaacaggttcctttaaaagattctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttggt 17573785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 213
Target Start/End: Original strand, 14373026 - 14373209
Alignment:
Q  30 tatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaaat 129  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||  ||| ||||| |  | |||||||| |||   ||||||| |||     
T  14373026 tatggatttaatttggcataaacaggtacctctaaaagtatctattcttgcttggcagcttttgaggaacggcttacctacgaaaggaaatttggcaaac 14373125  T
Q  130 cgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcatttgtttttgtcttgt 213  Q
    || |||||| | ||| |||||| |||||| |||||||| || | ||||  ||  |||||||    |||||||||||||||||||    
T  14373126 cgtggcattatttctatggaggggcggttgtgtgtttccggttatgggcatgatgaagatgtaaatcatttgtttttgtcttgt 14373209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 17606367 - 17606449
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||||| |||||||||||||||||||| ||| | ||||| ||||||||||||||||||||  |||||||||  ||||||||    
T  17606367 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcatttacctac 17606449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 21630140 - 21630226
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 114  Q
    |||||||| |||||||||||||| ||||| ||| | ||||| |||||||||| |||||||||  |||||||||| ||||||||||||    
T  21630140 aatatggagttaatttggcataaccaggttcctttaaaagtttctatccttgtttggcgactattgagggatcgtttacctacaaaa 21630226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 20883066 - 20883215
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaa 127  Q
    |||||||| ||||| ||||||||| |||| ||| | ||||| ||||||||||||||||| ||  |||||||| | |||||||| |||   || ||||||     
T  20883066 aatatggagttaatctggcataaataggttcctttaaaagtttctatccttgcttggcggctgttgagggattgtttacctactaaatcgaacttggtag 20883165  T
Q  128 atcgaggcattctatctgtggaggagcggttatgtgtttctggatgtggg 177  Q
    |||| |||||| ||||||||||||  ||||| |||||  | |||||||||    
T  20883166 atcgtggcattatatctgtggaggctcggttttgtgtcacgggatgtggg 20883215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 10577282 - 10577364
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    ||||| || |||||||||||||||||||| ||| | ||||| | ||||||||||||||||||  |||||||||| ||||||||    
T  10577282 aatatagagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctac 10577364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 15958846 - 15958928
Alignment:
Q  28 aatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 110  Q
    |||||| | ||||| |||||||||||||| ||||| ||||| ||||| ||||||||||| ||| |||||||||  ||||||||    
T  15958846 aatatgaagttaatatggcataaacaggttcctcttaaagtctctattcttgcttggcggcttttgagggatcatttacctac 15958928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 13937817 - 13937711
Alignment:
Q  18 gttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaactt 117  Q
    |||||| || |||||||| || |||||||| |||||||| ||| | ||||| |||||  ||||||||||  | |||||||| ||||||||||| ||||      
T  13937817 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 13937718  T
Q  118 aatttgg 124  Q
    |||||||    
T  13937717 aatttgg 13937711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 33185539 - 33185457
Alignment:
Q  32 tggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 114  Q
    |||| ||||||||||||||||| |||||||| ||||| |||||  ||||||| ||| | || ||||| || ||||||| ||||    
T  33185539 tggaattaatttggcataaacatgtccctctgaaagtctctatttttgcttgacgaatgcttagggaacgattacctataaaa 33185457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 3386 - 3173
Alignment:
Q  1 tcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgacttctgagggatc 100  Q
    ||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||| |||| ||||    
T  3386 tcacaggagcaaccctagttacaccataatatggagttaatttggcataaacaggttcctcttaaagtttctatccttgcttggagacttttgagagatc 3287  T
Q  101 ggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgcttctcattt 200  Q
    |||||||||| |||   ||||||| ||| |  |||||| || || |||||| |||||| |||||||||||||||||||  || ||||||| |  ||||||    
T  3286 ggttacctacgaaaagcaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcattt 3187  T
Q  201 gtttttgtcttgtg 214  Q
    ||||||||||||||    
T  3186 gtttttgtcttgtg 3173  T

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