View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_496 (Length: 223)
Name: NF7829A_low_496
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_496 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 22270584 - 22270806
Alignment:
| Q |
1 |
tggaggagattcttcacgatgagcaggagaaagatatttgtggtatggattctgatttcctatttcgcggaggcagcatccgctgccacatttatttaag |
100 |
Q |
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| T |
22270584 |
tggaggagattctccacgatgagaaggagaaagacatttctggcatggattctgatttccgatttctcagaggtagcatccgctgctacatttatttgag |
22270683 |
T |
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| Q |
101 |
tagcggtttgttgattttggtgagcgacctcgatttgagtcgggattgtagtaggaattttatcttgattttcttctactcaggagagactcacattttg |
200 |
Q |
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| T |
22270684 |
tagcggtttgttgattttggcgagcgacctcgatttgagttggtattgtggtaggaattttttcttgattttcttctactcaggagagactcacattttg |
22270783 |
T |
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| Q |
201 |
ttgttggagtaggttgacaatgt |
223 |
Q |
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||| ||||||| ||||||||||| |
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| T |
22270784 |
ttgctggagtaagttgacaatgt |
22270806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 223
Target Start/End: Complemental strand, 31111916 - 31111779
Alignment:
| Q |
86 |
ccacatttatttaagtagcggtttgttgattttggtgagcgacctcgatttgagtcgggattgtagtaggaattttatcttgattttcttctactcagga |
185 |
Q |
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||||||| ||| ||| ||||||||||||||| | ||| |||||| |||| |||| ||| || || |||||||| |||||||||||||||| | |
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| T |
31111916 |
ccacattcattggagtggcggtttgttgatttcgttgaacgaccttaatttaagtcacatttgcagcagaaattttatattgattttcttctacttgagt |
31111817 |
T |
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| Q |
186 |
gagactcacattttgttgttggagtaggttgacaatgt |
223 |
Q |
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| T |
31111816 |
gagacacgcattctattgttggagtaggttgacaatgt |
31111779 |
T |
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