View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_501 (Length: 222)
Name: NF7829A_low_501
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_501 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 31171108 - 31170890
Alignment:
| Q |
1 |
tcagctgcacaactatcattacttgaagacgaaatgcgccgtatagaaagagtcaatgtaaggccaaagtcataaaagtttatttcttccttttccctcc |
100 |
Q |
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| T |
31171108 |
tcagctgcacaactatcattacttgaagacgaaatgcgccgtatagaaagagtcaatgtaaggccaaagtcataaaagtttatttcttccttttccctcc |
31171009 |
T |
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| Q |
101 |
ttaagatctctgttcgtaagataatttcataatgtcgtannnnnnncctttctgctcaatggctactaatttatgacaaacaattttgagcaaatatcac |
200 |
Q |
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| T |
31171008 |
ttaagatctctgttcgtaagataatttcataatgtcgtattttttccctttctgctcgatggctactaatttatgacaaacaattttgagcaaatatcac |
31170909 |
T |
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| Q |
201 |
ttgctttttaacttttcat |
219 |
Q |
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||||||||||||||||||| |
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| T |
31170908 |
ttgctttttaacttttcat |
31170890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 35224485 - 35224424
Alignment:
| Q |
4 |
gctgcacaactatcattacttgaagacgaaatgcgccgtatagaaagagtcaatgtaaggcc |
65 |
Q |
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|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35224485 |
gctgcacagctatcattactcgaagatgaaatgcgccgtatagaaagagtcaatgtaaggcc |
35224424 |
T |
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