View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_507 (Length: 219)
Name: NF7829A_low_507
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_507 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 124777 - 124566
Alignment:
| Q |
8 |
catcaaagcaactaatcataagtttaggctggtgtttaatgctgcaacaactattgatagcatcgacaaacatgacatacccaaaccaccattctgcttc |
107 |
Q |
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| T |
124777 |
catcaaagcaactaatcataagtttaggctggtgtttaatgttgcaacaactatcgatagcatcgataaacatgacatacccaaaccaccattctgcttc |
124678 |
T |
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| Q |
108 |
aaggaatttgatatgataaagaagggcgtactaaggcccgatgtccttataggttaaatcatcattcttttaattaagcttttgtttaatgcattttgta |
207 |
Q |
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| T |
124677 |
aaggaatttgatatgataaagaagggcgtactaaggcccgatgtccttataggttaaatcatcattcttttaattaagcttttgtttaatgcattttgta |
124578 |
T |
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| Q |
208 |
tttaatacgaat |
219 |
Q |
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|||||||||||| |
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| T |
124577 |
tttaatacgaat |
124566 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 23699885 - 23699791
Alignment:
| Q |
72 |
gacaaacatgacatacccaaaccaccattctgcttcaaggaatttgatatgataaagaagggcgtactaaggcccgatgtccttataggttaaat |
166 |
Q |
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| T |
23699885 |
gacaaacatgacatacctagaccatcattcagtttcaaggagtttgatgagatcaagaagggaatagtaaggccagatgtccttataggtaaaat |
23699791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 22079639 - 22079490
Alignment:
| Q |
12 |
aaagcaactaatcataagtttaggctggtgtttaatgctgcaacaactattgatagcatcgacaaacatgacatacccaaaccaccattctgcttcaagg |
111 |
Q |
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||||||||| ||||| ||| || |||||||||||| || ||||| | |||| | ||| ||||| |||||||| ||||||||| | ||| ||| |||| |
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| T |
22079639 |
aaagcaactgatcatccattttggttggtgtttaatggtggaacaagtgttgacaacattgacaagcatgacattcccaaaccatctttcaactttaagg |
22079540 |
T |
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| Q |
112 |
aatttgatatgataaagaagggcgtactaaggcccgatgtccttataggt |
161 |
Q |
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| T |
22079539 |
actttgatgagatcaagaagggagcactaaggccagatgtcctaataggt |
22079490 |
T |
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