View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_511 (Length: 219)
Name: NF7829A_low_511
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_511 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 34045050 - 34045251
Alignment:
| Q |
18 |
agaagctgatgaactttgagctgaaatggcccactgatgttccatcacttgaaggagacgaaatacaatacgctcggccacgacagtcatttggctgcat |
117 |
Q |
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| T |
34045050 |
agaagctgatgaactttgagctgaaatggcccactgatgttccatcgcttgaaggagacgaaatacaatacgctcggccacgacagtcatttggctgcat |
34045149 |
T |
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| Q |
118 |
aatcagttagttctgcttcagcaaattttacagatacggctttttctggctcaagtacttttcatttggctttggctttggctttggatcgtgcccggta |
217 |
Q |
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| T |
34045150 |
aatcagttagttctgcttcagcaaattttacagatacgactttttctggctcaagtacttttcatttgggtttggctttggctttggatcgtgcccggta |
34045249 |
T |
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| Q |
218 |
ta |
219 |
Q |
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|| |
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| T |
34045250 |
ta |
34045251 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 4043735 - 4043668
Alignment:
| Q |
123 |
gttagttctgcttcagcaaattttacagatacggctttttctggctcaagtacttttcatttggctttg |
191 |
Q |
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| T |
4043735 |
gttagttctgcttcagcaaatcttacacataagattttttctggttgaagta-ttttcatttgtctttg |
4043668 |
T |
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