View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_516 (Length: 218)
Name: NF7829A_low_516
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_516 |
 | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 47094533 - 47094721
Alignment:
| Q |
15 |
tattccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaatttt |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47094533 |
tattctctttggtggctaaaagctaacaatgttgtttttgtttttggctctcaattgtggtggtcgagtcctcttacctgtttgggactggcctaatttt |
47094632 |
T |
|
| Q |
115 |
gtttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47094633 |
gtttgactctgtatatttgtaaatactttggacattcttagtacatcttgtactaggaagagttcgtgatttgttaatataagttccat |
47094721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 48117048 - 48116862
Alignment:
| Q |
14 |
gtattccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaatt- |
112 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||| |||||| | ||||||||||| |||||| |
|
|
| T |
48117048 |
gtattccctttggtggctaaaagctaataatgttgtttttgtttttggttcccaactgtggtggtcaagtcct-tggtttgtttgggacttcgctaattt |
48116950 |
T |
|
| Q |
113 |
-----ttgtttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatata |
195 |
Q |
| |
|
||| |||||| |||||||||||||||||||||| ||| ||||||||||||| |||| ||| | || |||| |||||||||||| |
|
|
| T |
48116949 |
ttgtcttgattgactttgtatatttgtaaatactttgggcttccttgatacatcttgtacttggaggtgtccgtgttttgttaatata |
48116862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 30822205 - 30822389
Alignment:
| Q |
21 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgtttg |
119 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| | |||||||||||||| ||||| | | |||||||| || | |||| ||||||||| |
|
|
| T |
30822205 |
ctttggtggctaaaagctcatgatgttgtttttgtttttgagtttcaattgtggtggtcaagtcccttggcttgtttggggctaggctaatttttgtttg |
30822304 |
T |
|
| Q |
120 |
actctgtatatttgtaaatactttgga-ctttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
| |||||||||||||||||||| || ||| | || |||||||| |||| ||| | | |||| |||||||||||||||||||| |
|
|
| T |
30822305 |
tttatgtatatttgtaaatacttttgagcttccctggtacatcttgtactcggaggtgcccgtggtttgttaatataagttccat |
30822389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 36953102 - 36952915
Alignment:
| Q |
22 |
tttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaatttt------g |
115 |
Q |
| |
|
|||| |||||||||| ||| ||||||||||||| |||||| || ||| ||||||||| ||| || | ||||||||||| | ||||||| | |
|
|
| T |
36953102 |
tttgatggctaaaagttaataatgttgtttttggttttggttctcaactgtggtggttaagtactttggtttgtttgggacttggttaatttttgtcttg |
36953003 |
T |
|
| Q |
116 |
tttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
|| ||| |||||||||||||||||||||| ||| ||||||| ||||| |||| || | || |||| ||||||||||||| |||||| |
|
|
| T |
36953002 |
attaactttgtatatttgtaaatactttgggcttccttgatatatcttatacttagaggtgtccgtgttttgttaatataaattccat |
36952915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 35028901 - 35028712
Alignment:
| Q |
14 |
gtattccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaattt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35028901 |
gtattccctttggtggctaaaagctaacaatgttgtttttgtttttgactcccaactgtggtggtcgagtcctcttacctgtttgggactgacctaattt |
35028802 |
T |
|
| Q |
114 |
tgtttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35028801 |
tgcttgaccctgtatatttgtaaatactttggactttcttggtacatcttgtactaggaagagttcgtgatttgttaatataagttccat |
35028712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 30426111 - 30425923
Alignment:
| Q |
21 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaatt------tt |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||| ||| |||||| |||||| | ||||||| ||| | |||||| || |
|
|
| T |
30426111 |
ctttggtggctaaaagctaataatgttgtttttgtttttggttcccaactgttgtggtcaagtcctttggtttgtttggaacttggctaatttttgtctt |
30426012 |
T |
|
| Q |
115 |
gtttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
| |||||| |||||||||||||||||||||| ||| ||| |||||||| |||| ||| | || ||| |||||||||||||||||||| |
|
|
| T |
30426011 |
gattgactttgtatatttgtaaatactttgggcttccttagtacatcttgtacttggaggtgtctgtgttttgttaatataagttccat |
30425923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 12331528 - 12331345
Alignment:
| Q |
21 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgtttg |
119 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| | || ||||||||||| ||||| | | |||||||| || | |||| |||| ||| |
|
|
| T |
12331528 |
ctttggtggctaaaagctcataatgttgtttttgtttttggttttcatttgtggtggtcaagtcccttggcttgtttggggctaggctaatttttccttg |
12331429 |
T |
|
| Q |
120 |
actctgtatatttgtaaatact-ttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
| | ||||||||||| |||||| ||| ||| |||| ||| |||| |||||||||| || ||| ||||||||||||||||||||| |
|
|
| T |
12331428 |
attatgtatatttgtcaatactcttgagcttccttggtacgtcttgtactaggaagtgtccgt-atttgttaatataagttccat |
12331345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 5802381 - 5802438
Alignment:
| Q |
21 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggt |
78 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| | | ||| |||||||||| |
|
|
| T |
5802381 |
ctttggtggctaaaagctaataatgttgtttttgtttttagtttccatttgtggtggt |
5802438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 203
Target Start/End: Original strand, 5803387 - 5803520
Alignment:
| Q |
71 |
gtggtggtcgagtcctcttacctgtttgggactggcctaatttt-gtttgactctgtatatttgtaaatactttggactttcttgatacatcttttacta |
169 |
Q |
| |
|
||||||||| |||||| | | ||||||||||| | |||||||| |||||||| ||||||||||||||| ||| || | | |||| |||||||| |||| |
|
|
| T |
5803387 |
gtggtggtcaagtcctttggcttgtttgggacttggctaatttttgtttgactttgtatatttgtaaatgcttggggcctccttggtacatcttgtactt |
5803486 |
T |
|
| Q |
170 |
ggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
||| | || ||| ||||||||||| | |||||| |
|
|
| T |
5803487 |
ggaggtgtctgtggtttgttaatattatttccat |
5803520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 53656468 - 53656278
Alignment:
| Q |
14 |
gtattccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaattt |
113 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53656468 |
gtattccctttggtggctaaaagcta-caatgttgtttttgtttttggctcccaactgtggtggtcgagtcctcttacctgtttgggactggcctaattt |
53656370 |
T |
|
| Q |
114 |
tgtttgactctgtatatttgt--aaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
53656369 |
tgtttgtctctgtatatttgtaaaaatactttggactttcttggtacatcttgtactaggaagagttcgtgatttgttaatatatgttccat |
53656278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 52251585 - 52251768
Alignment:
| Q |
14 |
gtattccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaattt |
113 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
52251585 |
gtattccctttggtggctaaa------caatgttgtttttgtttttggttcccaattgtggtggtcgagtcctcttaccattttgggattggcctaattt |
52251678 |
T |
|
| Q |
114 |
tgtttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
52251679 |
tgtttgactctgtatatttgtaaatactttggactttcttgatacatcttgtactcaaaagagttcgcattttgttaatataagttccat |
52251768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 19548945 - 19549131
Alignment:
| Q |
18 |
tccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgt |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||||||||| ||||| | | ||||||||||| | |||| |||||| |
|
|
| T |
19548945 |
tccctttggtggctaaaagctaataatgttgtttttgtttttggtttccatttgtggtggtcatgtcctttggcttgtttgggacttggctaatttttgt |
19549044 |
T |
|
| Q |
117 |
ttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
||||| ||||||||||||||||||| || | | |||| |||||||| |||| ||| | || |||| |||||||||||||||||||| |
|
|
| T |
19549045 |
ttgaccatgtatatttgtaaatacttggggcctccttggtacatcttgtacttggaggtgtccgtggtttgttaatataagttccat |
19549131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 17699908 - 17699724
Alignment:
| Q |
21 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgtttg |
119 |
Q |
| |
|
|||||||||||||||||| | |||||| ||||||||||||| | |||||||||||||| | ||| | | |||||||| || | |||| ||||||||| |
|
|
| T |
17699908 |
ctttggtggctaaaagctcataatgttatttttgtttttgggtttcaattgtggtggtcaaatcccttggcttgtttggggctaggctaatttttgtttg |
17699809 |
T |
|
| Q |
120 |
actctgtatatttgtaaatactttgga-ctttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
| |||||||||||||||||||| || ||| | || |||||||| ||| | | | | ||||| |||||||||||||||||||| |
|
|
| T |
17699808 |
tttatgtatatttgtaaatacttttgagcttccctggtacatcttgcactggaaggtgctcgtggtttgttaatataagttccat |
17699724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 2250053 - 2249870
Alignment:
| Q |
20 |
cctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaattttgtttg |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2250053 |
cctttggtggctaaaagctaataatgttgtttttgtttttggttcccaattgtggtggtcgagtcctcttacctgtttgggactgacctaattttgtttg |
2249954 |
T |
|
| Q |
120 |
actctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||||||| ||||||||||| ||||||||| |
|
|
| T |
2249953 |
actctgtatatttgtaaatactttggattttcttggtacatcttgtacttggaagagttcgtaatttgttaatacaagttccat |
2249870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 9725149 - 9725327
Alignment:
| Q |
21 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgtttg |
119 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||||||||| | |||||||||||||| ||||| | | |||||||| || | |||| ||||||||| |
|
|
| T |
9725149 |
ctttgttggctaaaagctcataatgttgtttttgtttttggttttcaattgtggtggtcaagtcccttggcttgtttggggctaggctaatttttgtttg |
9725248 |
T |
|
| Q |
120 |
actctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagtt |
199 |
Q |
| |
|
| | ||||||||||| |||||| | || ||| || |||||||| |||||||||| || |||| ||||| |||||||||| |
|
|
| T |
9725249 |
attatgtatatttgtcaatactcttgagcttcctggtacatcttgtactaggaagtgtccgtg-tttgtgaatataagtt |
9725327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 31483085 - 31482896
Alignment:
| Q |
14 |
gtattccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaattt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
|
|
| T |
31483085 |
gtattccctttggtggctaaaagctaacaatgctgtttttgtttttgcttcccaattgtggtggtcgagtcctcttacctgtttggaattggtctaattt |
31482986 |
T |
|
| Q |
114 |
tgtttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
| |||||| |||||||||||||||||| ||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31482985 |
tatttgaccctgtatatttgtaaatacgttggactttcttggtacatcttgtaccaggaagagttcgtgatttgttaatataagttccat |
31482896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 6995445 - 6995570
Alignment:
| Q |
18 |
tccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaattttgt- |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||||||||| |||| | | | ||||||||||| |||||||| | |
|
|
| T |
6995445 |
tccctttggtggctaaaagctaataatgttgtttttgtttttggtttccatttgtggtggtcaagtcatttggcttgtttgggacttcgctaatttttta |
6995544 |
T |
|
| Q |
117 |
ttgactctgtatatttgtaaatactt |
142 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
6995545 |
ttgactctgtatatttgtaaatactt |
6995570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 25019784 - 25019967
Alignment:
| Q |
21 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaatttt-gtttg |
119 |
Q |
| |
|
|||||||||||||||| | | |||||||||||||||||||| | ||||||||||||||| |||||| | || ||||||||||| | |||||||| ||||| |
|
|
| T |
25019784 |
ctttggtggctaaaagttcataatgttgtttttgtttttgggttccaattgtggtggtcaagtcctttgacttgtttgggacttggctaatttttgtttg |
25019883 |
T |
|
| Q |
120 |
actctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||| |||||||| |||| ||| | || |||| |||||||||||||||||||| |
|
|
| T |
25019884 |
actctgtatatttgtaaatactttgggcctccttggtacatcttgtacttggaggtgtccgtggtttgttaatataagttccat |
25019967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 41806222 - 41806406
Alignment:
| Q |
21 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgtttg |
119 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| | ||| |||||||||| ||||| | | ||||||||||| | |||| ||||||||| |
|
|
| T |
41806222 |
ctttggtggctaaaagctcataatgttgtttttgtttttgggtttcaactgtggtggtcaagtcccttggcttgtttgggactaggctaatttttgtttg |
41806321 |
T |
|
| Q |
120 |
actctgtatatttgtaaatactttgga-ctttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
||| |||||||||||||||||||| || | | | ||||||||||| |||| ||| | || |||| |||||||||||||||||||| |
|
|
| T |
41806322 |
actatgtatatttgtaaatacttttgagcctccctgatacatcttgtacttggaggtgtccgtggtttgttaatataagttccat |
41806406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 30573811 - 30573989
Alignment:
| Q |
22 |
tttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgtttga |
120 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||| | ||||||||||||||| |||||| | | ||||||||||| | |||| |||||||||| |
|
|
| T |
30573811 |
tttggtggctaaaagctcataatgttgtttttgtttttgggttccaattgtggtggtcaagtcctttagcttgtttgggactaggctaatttttgtttga |
30573910 |
T |
|
| Q |
121 |
ctctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagtt |
199 |
Q |
| |
|
|| |||||||||||||||| | || | ||| | ||||||||| |||| ||| | | |||| |||||||||||||||| |
|
|
| T |
30573911 |
ctttgtatatttgtaaatattatgagccttcctaatacatcttgtacttggaggtgcccgtggtttgttaatataagtt |
30573989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 28042929 - 28042993
Alignment:
| Q |
22 |
tttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcct |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| |||||| |
|
|
| T |
28042929 |
tttggtggctaaaagctaacaatgttgtttttgtttttggtttccatttgtggtggtcaagtcct |
28042993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 65068 - 65246
Alignment:
| Q |
26 |
gtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaatt-ttgtttgactct |
124 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| | ||| |||||||||||||||||| | |||||| ||||| |||| ||| |||||||||| | |
|
|
| T |
65068 |
gtggcttaaagctaataatgttgtttttgtttttggtttccatttgtggtggtcgagtcctttggactgtttaggacttgcctgattattgtttgacttt |
65167 |
T |
|
| Q |
125 |
gtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| |||| ||||| || |||||||||||||||||| |||||| |
|
|
| T |
65168 |
gtatatttgtaaatactttgggctttcttggtacatcttgtacttggaagtgtccgtgatttgttaatataaattccat |
65246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 133564 - 133386
Alignment:
| Q |
26 |
gtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaatt-ttgtttgactct |
124 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| | ||| |||||||||||||||||| | |||||| ||||| |||| ||| |||||||||| | |
|
|
| T |
133564 |
gtggcttaaagctaataatgttgtttttgtttttggtttccatttgtggtggtcgagtcctttggactgtttaggacttgcctgattattgtttgacttt |
133465 |
T |
|
| Q |
125 |
gtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| |||| ||||| || |||||||||||||||||| |||||| |
|
|
| T |
133464 |
gtatatttgtaaatactttgggctttcttggtacatcttgtacttggaagtgtccgtgatttgttaatataaattccat |
133386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 36685523 - 36685328
Alignment:
| Q |
14 |
gtattccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaatt- |
112 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||| |||||| | | ||||||||||| | |||||| |
|
|
| T |
36685523 |
gtattccctttggtggctaaaagctaataatgttgtttttgtttttggttcccaactgtggtggtcaagtcctttgatttgtttgggacttggctaattt |
36685424 |
T |
|
| Q |
113 |
-----ttgtttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
||| |||||| |||||||||||||||||||| | ||| |||| |||||||| |||| ||| | || |||| |||||||||||||||||||| |
|
|
| T |
36685423 |
ttgtcttgattgactttgtatatttgtaaatactttaggcttccttggtacatcttatacttggaggtgtccgtgttttgttaatataagttccat |
36685328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 11867106 - 11866923
Alignment:
| Q |
21 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgtttg |
119 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| | ||||||||||||||| |||||| | || ||||||||||| | |||| ||||||||| |
|
|
| T |
11867106 |
ctttggtggctaaaagctcataatgttgtttttgtttttgggttccaattgtggtggtcaagtcctttgacttgtttgggactaggctaatttttgtttg |
11867007 |
T |
|
| Q |
120 |
actctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
|||||||||||||||||||||| || | | |||| |||||||| || | ||| | || |||| |||||||||||||||||||| |
|
|
| T |
11867006 |
actctgtatatttgtaaatactctgagcctccttggtacatcttgtagttggaggtgtccgtggtttgttaatataagttccat |
11866923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 27527820 - 27527983
Alignment:
| Q |
42 |
aatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaat-tttgtttgactctgtatatttgtaaatac |
140 |
Q |
| |
|
|||||||||||||||||||| | |||||||| ||||| ||||| | | ||||||||||| | ||||| ||||||||| | ||||||||||| ||||| |
|
|
| T |
27527820 |
aatgttgtttttgtttttggttttcaattgtgatggtcaagtcccttggcttgtttgggactaggctaatctttgtttgattatgtatatttgtcaatac |
27527919 |
T |
|
| Q |
141 |
tttgga-ctttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
| | || ||| | || |||||||| |||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
27527920 |
tcttgagcttccctggtacatcttgtactaggaggtgcccgtgatttgttaatataagttccat |
27527983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 10688235 - 10688119
Alignment:
| Q |
21 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgtttg |
119 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| | ||||||||||||||| ||| || | | ||||||||||| | |||| ||||||||| |
|
|
| T |
10688235 |
ctttggtggctaaaagctcataatgttgtttttgtttttgggttccaattgtggtggtcaagttctttggcttgtttgggacttggctaatttttgtttg |
10688136 |
T |
|
| Q |
120 |
actctgtatatttgtaa |
136 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10688135 |
actctgtatatttgtaa |
10688119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 26145896 - 26145709
Alignment:
| Q |
18 |
tccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaatt----- |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||| |||||| | |||||| |||| | |||||| |
|
|
| T |
26145896 |
tccctttggtggctaaaagctaataatgttgtttttgtttttggttcccaactgtggtggtcaagtcctttggtttgtttgagacttggctaatttttgt |
26145797 |
T |
|
| Q |
113 |
-ttgtttgactctgtatatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagtt |
199 |
Q |
| |
|
||| |||||| |||||||||||||||||||||| ||| ||| || || || |||| ||| | || |||| |||||||||||||||| |
|
|
| T |
26145796 |
cttgattgactttgtatatttgtaaatactttgggcttccttagtaaatgttgtacttggaggtgtccgtgttttgttaatataagtt |
26145709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 43309936 - 43309868
Alignment:
| Q |
18 |
tccctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcct |
86 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
43309936 |
tccctttggtggctaaaagctaataatgttgtttttgtttttggttcccaattgtggtggtcaagtcct |
43309868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 10687940 - 10687865
Alignment:
| Q |
128 |
tatttgtaaatactttggactttcttgatacatcttttactaggaagagttcgtgatttgttaatataagttccat |
203 |
Q |
| |
|
|||||||||||||||||| | | ||| |||||||| |||| ||| | || |||| |||||||||||||||||||| |
|
|
| T |
10687940 |
tatttgtaaatactttgggcatcattggtacatcttgtacttggaggtgtccgtggtttgttaatataagttccat |
10687865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 366570 - 366449
Alignment:
| Q |
21 |
ctttggtggctaaaagctaacaatgttgtttttgtttttggctcccaattgtggtggtcgagtcctcttacctgtttgggactggcctaa-ttttgtttg |
119 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| | |||||||||||||| ||||| | | |||||| |||| | |||| ||||||||| |
|
|
| T |
366570 |
ctttggtggctaaaagctcaaaatgttgtttttgtttttgggtttcaattgtggtggtcaagtcccttggcttgtttgcgactaggctaatttttgtttg |
366471 |
T |
|
| Q |
120 |
actctgtatatttgtaaatact |
141 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
366470 |
actatgtatatttgtaaatact |
366449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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