View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_526 (Length: 215)
Name: NF7829A_low_526
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_526 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 40062481 - 40062661
Alignment:
| Q |
12 |
tggacatcccaatcaaagtattttatggaaataaccaaattgatctgctgagtctaacagttggacttcaggttcagattttcgtgtttgtagtttccaa |
111 |
Q |
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| T |
40062481 |
tggacatcccaatcaaagtaatttatggaaataaccaaattgatctgctgagtctaacagttggacttcaggttcagattttcgtgtttgtagtttccaa |
40062580 |
T |
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| Q |
112 |
tcatgcatagaatggcttgctcctccaatgatttctctcattactatatctaagctaacatgaaccatatgcacatcagaa |
192 |
Q |
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| T |
40062581 |
ttatgcatagaatggcttgctcctccaaagatttctctcattactatatctaagctaacatgaaccatatgcacatcagaa |
40062661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 40093139 - 40093313
Alignment:
| Q |
13 |
ggacatcccaatcaaagtattttatggaaataaccaaattgatctgctgagtctaacagttggacttcaggttcagattttcgtgtttgtagtttccaat |
112 |
Q |
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| T |
40093139 |
ggacatcccgatcacagttctttctggaaagaataaaattgatctgctgagtttaacagttggacttcaggttcagcttttcttgtttttagtttccaat |
40093238 |
T |
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| Q |
113 |
catgcatagaatggcttgctcctccaatgatttctctcattactatatctaagctaacatgaaccatatgcacatcagaa |
192 |
Q |
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| T |
40093239 |
tatgcatagaattgcttgctcccccaatgatttctctcattactatat-----ctaacatgaaccatatacacatcagaa |
40093313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 40080933 - 40081010
Alignment:
| Q |
115 |
tgcatagaatggcttgctcctccaatgatttctctcattactatatctaagctaacatgaaccatatgcacatcagaa |
192 |
Q |
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| T |
40080933 |
tgcatagactggcttgctccttcagtgatttctctcattactatatctaagctaatatgaaccatatacacatcagaa |
40081010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 40080805 - 40080901
Alignment:
| Q |
12 |
tggacatcccaatcaaagtattttatggaaataaccaaattgatctgctgagtctaacagttggacttcaggttcagattttcgtgtttgtagtttc |
108 |
Q |
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| T |
40080805 |
tggacatcccaatcgcactagtttccggaaagaacaaaattgatctactgagtttaacagttggacttcaggttcagcttttcttgtttttagtttc |
40080901 |
T |
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