View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_53 (Length: 412)
Name: NF7829A_low_53
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 47 - 396
Target Start/End: Original strand, 23333498 - 23333847
Alignment:
| Q |
47 |
gcaagccaacgaaatcatttgaattagggattttgtccaacgtaattcagcatattataatgattgtttcatcagaaagcagttgacatataaaaaatca |
146 |
Q |
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| T |
23333498 |
gcaagccaacgaaatcatttgaattagggattttgtccaacgtaagtcagcatattataatgattgttccatcagaaagcagttgacatataaaaaatca |
23333597 |
T |
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| Q |
147 |
cttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggtaa |
246 |
Q |
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| T |
23333598 |
cttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggcaa |
23333697 |
T |
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| Q |
247 |
cgacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctctttgggggagtactg |
346 |
Q |
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| T |
23333698 |
cgacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctcttggggggagtactg |
23333797 |
T |
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| Q |
347 |
cttcagctgcattctggcacacaattttatcggtcaacttcgtgatgtcc |
396 |
Q |
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| T |
23333798 |
cttcagctgcattccggcacacaattttatcggtcaacttcgttatgtcc |
23333847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 23333995 - 23333952
Alignment:
| Q |
8 |
ggctggtgtgtaagattggaggtgggtggggtgctctttgcaag |
51 |
Q |
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| T |
23333995 |
ggctggtgtgtaagattggaggtgggtggggtgctctttgcaag |
23333952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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