View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_538 (Length: 209)

Name: NF7829A_low_538
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_538
NF7829A_low_538
[»] chr7 (15 HSPs)
chr7 (35-196)||(39931130-39931292)
chr7 (35-166)||(36363991-36364122)
chr7 (38-124)||(17721152-17721238)
chr7 (38-124)||(234975-235061)
chr7 (38-124)||(4937665-4937751)
chr7 (35-121)||(31423122-31423208)
chr7 (38-124)||(47877500-47877585)
chr7 (38-124)||(11276785-11276871)
chr7 (35-121)||(37255278-37255364)
chr7 (35-110)||(25018852-25018927)
chr7 (38-124)||(29968491-29968577)
chr7 (39-102)||(17504097-17504160)
chr7 (39-102)||(17549054-17549117)
chr7 (8-42)||(10646044-10646078)
chr7 (37-90)||(6335940-6335993)
[»] chr4 (20 HSPs)
chr4 (35-121)||(55725240-55725326)
chr4 (38-124)||(1828077-1828163)
chr4 (35-121)||(48312614-48312700)
chr4 (38-121)||(11586735-11586818)
chr4 (38-124)||(15740737-15740823)
chr4 (38-124)||(19755784-19755870)
chr4 (38-124)||(19783936-19784022)
chr4 (38-124)||(23642128-23642214)
chr4 (38-124)||(23647786-23647872)
chr4 (38-124)||(47419321-47419407)
chr4 (38-123)||(5789629-5789714)
chr4 (35-121)||(54482693-54482779)
chr4 (35-124)||(46146194-46146283)
chr4 (77-124)||(19735311-19735358)
chr4 (76-116)||(23657822-23657862)
chr4 (35-110)||(19162711-19162786)
chr4 (45-120)||(36183058-36183133)
chr4 (37-110)||(40688597-40688670)
chr4 (76-116)||(8935599-8935639)
chr4 (38-90)||(54685161-54685213)
[»] chr8 (15 HSPs)
chr8 (42-141)||(38046858-38046957)
chr8 (38-124)||(9923118-9923204)
chr8 (38-124)||(172576-172662)
chr8 (38-124)||(7924903-7924989)
chr8 (38-124)||(8300320-8300406)
chr8 (35-121)||(13879021-13879107)
chr8 (35-124)||(20824816-20824905)
chr8 (35-121)||(25090907-25090993)
chr8 (38-124)||(41664905-41664991)
chr8 (76-178)||(43283248-43283350)
chr8 (35-110)||(36492912-36492987)
chr8 (35-110)||(4310376-4310451)
chr8 (43-120)||(37165663-37165740)
chr8 (76-121)||(42177127-42177172)
chr8 (35-71)||(43271007-43271043)
[»] chr2 (10 HSPs)
chr2 (35-178)||(37445556-37445699)
chr2 (38-124)||(28253237-28253323)
chr2 (35-121)||(33515741-33515827)
chr2 (35-120)||(14440265-14440350)
chr2 (35-110)||(43310790-43310865)
chr2 (76-121)||(12646056-12646101)
chr2 (37-110)||(13416202-13416275)
chr2 (35-71)||(12646091-12646127)
chr2 (35-110)||(26146746-26146821)
chr2 (76-138)||(15018180-15018242)
[»] scaffold1350 (1 HSPs)
scaffold1350 (38-127)||(58-147)
[»] chr5 (24 HSPs)
chr5 (38-124)||(28535212-28535298)
chr5 (38-124)||(31642028-31642114)
chr5 (35-137)||(33170162-33170264)
chr5 (38-124)||(42514237-42514323)
chr5 (35-124)||(8299716-8299805)
chr5 (35-124)||(42928648-42928737)
chr5 (45-124)||(30731858-30731937)
chr5 (38-124)||(27116710-27116796)
chr5 (38-124)||(35983328-35983414)
chr5 (35-116)||(27796009-27796090)
chr5 (38-124)||(23238900-23238986)
chr5 (76-124)||(27165525-27165573)
chr5 (35-110)||(41590627-41590702)
chr5 (46-124)||(12825716-12825794)
chr5 (35-110)||(4297843-4297918)
chr5 (35-102)||(10780740-10780807)
chr5 (35-110)||(36256309-36256384)
chr5 (76-138)||(22094825-22094887)
chr5 (13-42)||(12870260-12870289)
chr5 (35-116)||(15862211-15862292)
chr5 (38-71)||(27165502-27165535)
chr5 (35-116)||(42039239-42039320)
chr5 (35-71)||(25856973-25857009)
chr5 (76-124)||(25856999-25857047)
[»] chr3 (14 HSPs)
chr3 (35-121)||(19891197-19891283)
chr3 (38-124)||(2364794-2364880)
chr3 (35-121)||(48569573-48569659)
chr3 (35-137)||(962697-962799)
chr3 (38-124)||(10323108-10323194)
chr3 (38-124)||(19919766-19919852)
chr3 (38-124)||(34332352-34332438)
chr3 (35-118)||(12341789-12341872)
chr3 (35-110)||(52250658-52250733)
chr3 (35-124)||(3141368-3141457)
chr3 (35-110)||(8130482-8130557)
chr3 (38-124)||(16179464-16179550)
chr3 (38-127)||(20531588-20531677)
chr3 (35-91)||(6825372-6825428)
[»] chr6 (20 HSPs)
chr6 (54-127)||(10922067-10922140)
chr6 (35-124)||(17605868-17605957)
chr6 (38-123)||(18682111-18682196)
chr6 (38-121)||(14372528-14372611)
chr6 (38-124)||(2554123-2554209)
chr6 (35-121)||(10576784-10576870)
chr6 (35-124)||(13938236-13938325)
chr6 (91-178)||(5041980-5042066)
chr6 (35-118)||(17577252-17577335)
chr6 (76-116)||(5085601-5085641)
chr6 (38-110)||(15602855-15602927)
chr6 (38-71)||(15956528-15956561)
chr6 (39-88)||(18588902-18588951)
chr6 (76-137)||(24767004-24767065)
chr6 (39-120)||(26514245-26514326)
chr6 (76-116)||(503107-503147)
chr6 (76-116)||(8264748-8264788)
chr6 (35-71)||(21629656-21629692)
chr6 (38-70)||(24766951-24766983)
chr6 (35-123)||(32186201-32186289)
[»] scaffold0034 (1 HSPs)
scaffold0034 (38-124)||(105380-105466)
[»] chr1 (5 HSPs)
chr1 (38-124)||(6051120-6051206)
chr1 (38-124)||(47622614-47622700)
chr1 (13-42)||(12606577-12606606)
chr1 (38-71)||(35541604-35541637)
chr1 (76-124)||(35541566-35541614)
[»] scaffold0472 (1 HSPs)
scaffold0472 (38-124)||(3769-3855)
[»] scaffold0238 (1 HSPs)
scaffold0238 (13-42)||(5346-5375)
[»] scaffold0026 (1 HSPs)
scaffold0026 (35-115)||(67606-67686)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 35 - 196
Target Start/End: Original strand, 39931130 - 39931292
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgagaatccgggat 134  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  39931130 tagggtgttggtggctaggtatggtgtggaggatgggcggttggaggatgggggccggagttgttcttgttggtggtgggagatagtgagaattcgggat 39931229  T
Q  135 ggggttgaaggta-ggagtgatgggtggtttgcgtcgtgtgtgtctttttggtgtgatgtcca 196  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||    
T  39931230 ggggttgaaggtagggagtgatgggtggtttgtgtcgtgtgtgtctttttggtatgatgtcca 39931292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 36364122 - 36363991
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgagaatccgggat 134  Q
    |||||||||||||||||| || ||||||||||||     | ||||||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||||    
T  36364122 tagggtgttggtggctagttaaggtgtggaggataaatagttggaggatgagggccgaagttgttcttcttgatggagggagatagtgagaatccgggat 36364023  T
Q  135 ggggttgaaggtaggagtgatgggtggtttgc 166  Q
    ||||| | ||||||  ||||||||||||||||    
T  36364022 ggggtaggaggtagtggtgatgggtggtttgc 36363991  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 17721238 - 17721152
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||||||||||||||||||||||| ||||||  |  |||||||||||||||| ||||||||||  |||||| |||||||||||||    
T  17721238 ggtgttggtggctaggtatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcatggtggagggagatagtgag 17721152  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 234975 - 235061
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||| ||||||  |  |||||||||||||||| ||||||||||  |||||| |||||||||||||    
T  234975 ggtgttagtggctaggtatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcgtggtggagggagatagtgag 235061  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 4937665 - 4937751
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  4937665 ggtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgag 4937751  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 31423208 - 31423122
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 121  Q
    ||||||||||||||||||| ||||||||| ||||||  |  |||||||||||||||| ||||||||||  |||| | ||||||||||    
T  31423208 tagggtgttggtggctaggcatggtgtggcggatggtggtttggaggatgggggccggagttgttcttcgtggttgagggagatagt 31423122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 47877585 - 47877500
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||||||||||||||||||||||| ||||||  |  |||||||| ||||||| ||||||||||  |||||| |||||||||||||    
T  47877585 ggtgttggtggctaggtatggtgtggcggatggaggtttggaggat-ggggccggagttgttcttcgtggtggagggagatagtgag 47877500  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 11276785 - 11276871
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||| ||||||  |  |||||||||||| ||| |||||||| |  |||||| |||||||||||||    
T  11276785 ggtgttagtggctaggtatggtgtggcggatggaggtttggaggatggggcccggagttgttcgtcgtggtggagggagatagtgag 11276871  T

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Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 37255364 - 37255278
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 121  Q
    ||||||||||||||||||||||||||||| ||||||  |  |||||||||||||| | |||||||| |  || ||| ||||||||||    
T  37255364 tagggtgttggtggctaggtatggtgtggcggatggtggtttggaggatgggggctggagttgttcatcgtgatggagggagatagt 37255278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 25018852 - 25018927
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 110  Q
    ||||||||||||||| || ||||||| ||||| |||| || |||||| |||||| |||||| |||||| |||||||    
T  25018852 tagggtgttggtggcaagatatggtgaggaggctgggaggttggaggttgggggtcgaagtggttcttcttggtgg 25018927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 29968577 - 29968491
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| |||||||||||||| |||| ||||||  |  ||||||||| |||||| |||||||| |  |||||| |||||||||||||    
T  29968577 ggtgttagtggctaggtatggcgtggcggatggaggtttggaggatgcgggccggagttgttcgtcgtggtggagggagatagtgag 29968491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 17504097 - 17504160
Alignment:
Q  39 gtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttctt 102  Q
    ||||||||||| || || |||| |||||||||| || |||||||||||||||| ||| ||||||    
T  17504097 gtgttggtggcgagatacggtgaggaggatgggaggttggaggatgggggccggagtggttctt 17504160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 17549117 - 17549054
Alignment:
Q  39 gtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttctt 102  Q
    ||||||||||| || || |||| |||||||||| || |||||||||||||||| ||| ||||||    
T  17549117 gtgttggtggcgagatacggtgaggaggatgggaggttggaggatgggggccggagtggttctt 17549054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 10646044 - 10646078
Alignment:
Q  8 atggacatcagatcaaaggctgagatttagggtgt 42  Q
    |||| ||||||||||||||||||||||||||||||    
T  10646044 atggtcatcagatcaaaggctgagatttagggtgt 10646078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 6335940 - 6335993
Alignment:
Q  37 gggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggcc 90  Q
    |||||||||| |||||||||||||||   |||||| || |||||||||||||||    
T  6335940 gggtgttggttgctaggtatggtgtgcgcgatgggaggttggaggatgggggcc 6335993  T

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Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 55725240 - 55725326
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 121  Q
    ||||||||||||||||||||||||||||||||||||  |  |||||||||||||||| |||||||||| ||||||| ||||||||||    
T  55725240 tagggtgttggtggctaggtatggtgtggaggatggtggtttggaggatgggggccggagttgttcttcttggtggagggagatagt 55725326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 1828077 - 1828163
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||||||||||  |  ||| |||||||||||| |||||||||| ||||||| |||||||||||||    
T  1828077 ggtgttagtggctaggtatggtgtggaggatggaggtttggcggatgggggccggagttgttcttcttggtggcgggagatagtgag 1828163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 48312700 - 48312614
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 121  Q
    ||||||||||||||||||||||||||||| ||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||||||    
T  48312700 tagggtgttggtggctaggtatggtgtggcggatggtggtttggaggatgggggccggagttgttcttcgtggtggagggagatagt 48312614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 11586735 - 11586818
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 121  Q
    |||||| ||||||||||||||||||| ||||||  |  ||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  11586735 ggtgttagtggctaggtatggtgtggcggatggaggtttggagaatgggggccgaagttgttcttcttggtggagggagatagt 11586818  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 15740823 - 15740737
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||||||||||  |  ||| |||||||||||| ||||||||||  |||||| |||||||||||||    
T  15740823 ggtgttagtggctaggtatggtgtggaggatggaggtttggcggatgggggccggagttgttcttcatggtggcgggagatagtgag 15740737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 19755870 - 19755784
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||| ||||||  |  |||||||||||||||| ||||||||||  |||||| |||||||||||||    
T  19755870 ggtgttagtggctaggtatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcgtggtggagggagatagtgag 19755784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 19783936 - 19784022
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||| ||||||  |  |||||||||||||||| ||||||||||  |||||| |||||||||||||    
T  19783936 ggtgttagtggctaggtatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcgtggtggagggagatagtgag 19784022  T

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Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 23642128 - 23642214
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  23642128 ggtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgag 23642214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 23647786 - 23647872
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  23647786 ggtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgag 23647872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 47419407 - 47419321
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  47419407 ggtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgag 47419321  T

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Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 5789629 - 5789714
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtga 123  Q
    |||||| |||||||||||||||||||||| |||  |  |||||||||||||||| |||||||||| ||||||| ||||||| ||||    
T  5789629 ggtgttagtggctaggtatggtgtggagggtggaggtttggaggatgggggccggagttgttcttcttggtggcgggagattgtga 5789714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 54482693 - 54482779
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 121  Q
    |||||||||||||||||||||||||||||  |||||  |  ||||||||||||| || ||||||||||  |||||| ||||||||||    
T  54482693 tagggtgttggtggctaggtatggtgtggcagatggtggtttggaggatgggggtcggagttgttcttcgtggtggagggagatagt 54482779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 46146283 - 46146194
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||||||||||||||| |||||||  | ||||||  |  ||||| |||||||||| |||||||| | ||||||| |||||||||||||    
T  46146283 tagggtgttggtggctagatatggtgcagcggatggtggtttggagaatgggggccggagttgttcatcttggtggcgggagatagtgag 46146194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 19735311 - 19735358
Alignment:
Q  77 ggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  19735311 ggaggatgggggccggagttgttcttcttggtggcgggagatagtgag 19735358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 23657862 - 23657822
Alignment:
Q  76 tggaggatgggggccgaagttgttcttgttggtggtgggag 116  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  23657862 tggaggatgggggccgaagttgttcttcttggtggcgggag 23657822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 19162711 - 19162786
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 110  Q
    |||||||||||| ||||| ||||||||   ||| ||| || |||||||||||||||| ||| |||||| |||||||    
T  19162711 tagggtgttggttgctagatatggtgttagggacgggaggttggaggatgggggccggagtggttctttttggtgg 19162786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 36183133 - 36183058
Alignment:
Q  45 gtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatag 120  Q
    ||||| || ||||||| ||||||||||||| |||||| ||||||||| |||  ||||  ||||||| |||||||||    
T  36183133 gtggcaagatatggtgaggaggatgggcggttggaggttgggggccggagtgtttctacttggtggagggagatag 36183058  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 40688670 - 40688597
Alignment:
Q  37 gggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 110  Q
    |||||||||| | ||| ||||||||   ||||||| || |||||||||||||||| ||| |||||| |||||||    
T  40688670 gggtgttggttggtagatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtgg 40688597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 8935639 - 8935599
Alignment:
Q  76 tggaggatgggggccgaagttgttcttgttggtggtgggag 116  Q
    |||||||||||||||| |||||||||| ||||||| |||||    
T  8935639 tggaggatgggggccggagttgttcttcttggtggcgggag 8935599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 54685213 - 54685161
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggcc 90  Q
    ||||||||| |||||||||||||||   |||||| || |||||||||||||||    
T  54685213 ggtgttggttgctaggtatggtgtgcgtgatgggaggttggaggatgggggcc 54685161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 38046957 - 38046858
Alignment:
Q  42 ttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgagaatccgggatggggttg 141  Q
    ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||  || ||| |||||||||| ||||| |||| ||| ||||    
T  38046957 ttggttgctaggtatggtgtggaggatgggaggttggaggatgggggccgaagttgttcttcgtgatggagggagatagttagaattcggggtggtgttg 38046858  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 9923204 - 9923118
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||||||||||||||||||||||| ||||||  |  |||||||||||||||| ||||||||||  |||||| |||||||||||||    
T  9923204 ggtgttggtggctaggtatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcatggtggagggagatagtgag 9923118  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 172576 - 172662
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  172576 ggtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagatcgtgag 172662  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 7924989 - 7924903
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  7924989 ggtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgag 7924903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 8300406 - 8300320
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  8300406 ggtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagatcgtgag 8300320  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 13879021 - 13879107
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 121  Q
    ||||||||||||||||||||||||||||| ||||||  |  |||||||||||||||  ||||||||||  |||||| ||||||||||    
T  13879021 tagggtgttggtggctaggtatggtgtggcggatggtggtttggaggatgggggccagagttgttcttcgtggtggagggagatagt 13879107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 20824905 - 20824816
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||||||| ||||||||||||| |||||||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  20824905 tagggtgttgttggctaggtatggcgtggaggatggtggtttggaggatgggggccggagttgttctttgtggtggagggagattgtgag 20824816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 25090993 - 25090907
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 121  Q
    ||||||||||||||||| ||||||||||| ||||||  |  |||||||||||||||| || |||||||  |||||| ||||||||||    
T  25090993 tagggtgttggtggctatgtatggtgtggcggatggtggtttggaggatgggggccggagctgttcttcgtggtggagggagatagt 25090907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 41664905 - 41664991
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||| ||||||  |  |||||||||||||||| ||||||||||  ||||||  ||||||||||||    
T  41664905 ggtgttagtggctaggtatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcgtggtggatggagatagtgag 41664991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 43283248 - 43283350
Alignment:
Q  76 tggaggatgggggccgaagttgttcttgttggtggtgggagatagtgagaatccgggatggggttgaaggtaggagtgatgggtggtttgcgtcgtgtgt 175  Q
    ||||||||||  |||| |||||||||||||||||| ||||||||||||||||  |||||| |||||  | |||   |||| |||||||||| ||||||||    
T  43283248 tggaggatggaagccggagttgttcttgttggtggagggagatagtgagaatttgggatgaggttggtgttagttatgataggtggtttgcttcgtgtgt 43283347  T
Q  176 gtc 178  Q
    |||    
T  43283348 gtc 43283350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 36492987 - 36492912
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 110  Q
    ||||||||||||||| |||||||||| |||||||||| || ||| || ||||||||| ||  |||||| |||||||    
T  36492987 tagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttgggggccggagaggttcttcttggtgg 36492912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 4310376 - 4310451
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 110  Q
    |||||||||||| ||||| |||| |||   ||||||| || |||||||||||||||| ||| |||||| |||||||    
T  4310376 tagggtgttggttgctagatatgatgttagggatgggaggttggaggatgggggccggagtggttctttttggtgg 4310451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 37165663 - 37165740
Alignment:
Q  43 tggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatag 120  Q
    ||||||| || ||||| | ||||||||||||| |||||| ||||||||| |||  ||||  ||||||| |||||||||    
T  37165663 tggtggcgagatatggcgaggaggatgggcggttggaggttgggggccggagtgtttctacttggtggagggagatag 37165740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 42177127 - 42177172
Alignment:
Q  76 tggaggatgggggccgaagttgttcttgttggtggtgggagatagt 121  Q
    ||||||||| |||||||||||||||||  |||||| ||||||||||    
T  42177127 tggaggatgcgggccgaagttgttcttcgtggtggagggagatagt 42177172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 43271043 - 43271007
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatggg 71  Q
    |||||||||| |||||||||||||||||| |||||||    
T  43271043 tagggtgttgatggctaggtatggtgtggcggatggg 43271007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 178
Target Start/End: Complemental strand, 37445699 - 37445556
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgagaatccgggat 134  Q
    |||||||||||||||||||||||||| ||||||  || || |||||||||||||||| ||||||||||  ||||||||||||   |||||||| |||||     
T  37445699 tagggtgttggtggctaggtatggtgcggaggacaggaggttggaggatgggggccggagttgttcttcgtggtggtgggagtgtgtgagaattcgggac 37445600  T
Q  135 ggggttgaaggtaggagtgatgggtggtttgcgtcgtgtgtgtc 178  Q
    ||| |   ||||||  |||||||||||||| ||  |||||||||    
T  37445599 gggataagaggtagtggtgatgggtggtttacggagtgtgtgtc 37445556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 28253323 - 28253237
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||||  ||||||||||||||||| ||||||  |  |||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  28253323 ggtgttgagggctaggtatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcttggtggagggagatagtgag 28253237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 33515741 - 33515827
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 121  Q
    ||||||||||||||||||||||||||||| ||||||  |  ||||||||||||| || || |||||||  |||||| ||||||||||    
T  33515741 tagggtgttggtggctaggtatggtgtggcggatggtggtttggaggatgggggtcggagctgttcttcgtggtggagggagatagt 33515827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 14440350 - 14440265
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatag 120  Q
    |||||||||| |||||||||||||| ||| ||||||  |  |||||||||||||||| ||||||||||  |||||| |||||||||    
T  14440350 tagggtgttgttggctaggtatggtatggcggatggtggtttggaggatgggggccggagttgttcttcgtggtggagggagatag 14440265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 43310865 - 43310790
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 110  Q
    ||||||||||||||| || ||||| | |||||||||| || |||||| ||||||||| ||| |||||| |||||||    
T  43310865 tagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtgg 43310790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 12646101 - 12646056
Alignment:
Q  76 tggaggatgggggccgaagttgttcttgttggtggtgggagatagt 121  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||||    
T  12646101 tggaggatgggggccggagttgttcttcttggtggagggagatagt 12646056  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 13416275 - 13416202
Alignment:
Q  37 gggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 110  Q
    |||||||||| |||||||||||||||   |||||| || |||||||||||||||| ||| |||||  |||||||    
T  13416275 gggtgttggttgctaggtatggtgtgcgtgatgggaggttggaggatgggggccggagtggttctatttggtgg 13416202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 12646127 - 12646091
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatggg 71  Q
    ||||||||||||||||||||| |||||||||||||||    
T  12646127 tagggtgttggtggctaggtaaggtgtggaggatggg 12646091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 26146821 - 26146746
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 110  Q
    ||||||||||||||| || ||||| | |||||||||| || |||||| ||||||||| ||| ||| || |||||||    
T  26146821 tagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggggccggagtggttattcttggtgg 26146746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 15018242 - 15018180
Alignment:
Q  76 tggaggatgggggccgaagttgttcttgttggtggtgggagatagtgagaatccgggatgggg 138  Q
    |||||| |||||||||||||||||||| ||||||| ||||| ||| ||| ||  |||||||||    
T  15018242 tggaggttgggggccgaagttgttcttcttggtggcgggaggtagggaggattagggatgggg 15018180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 147 - 58
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgagaat 127  Q
    ||||||||||| |||||||||||||||||||||  |  |||||||||||||||||||||| |||| ||||||| |||||||||| |||||    
T  147 ggtgttggtggttaggtatggtgtggaggatggtggtttggaggatgggggccgaagttgctcttcttggtggagggagatagtcagaat 58  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 28535212 - 28535298
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||||||||||||||||||||||| ||||||  |  |||||||||||||||| ||||||||||  |||||| |||||||||||||    
T  28535212 ggtgttggtggctaggtatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcatggtggagggagatagtgag 28535298  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 31642114 - 31642028
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    ||||||||||||||| |||||||||| ||||||  |  |||||||||||||||| ||||||||||  |||||| |||||||||||||    
T  31642114 ggtgttggtggctagatatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcatggtggcgggagatagtgag 31642028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 33170264 - 33170162
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgagaatccgggat 134  Q
    ||||||||| |||||||||||||||| || ||||||  |  |||||||||||||||| |||||||| | ||||||| ||||||||||||| ||  |||||    
T  33170264 tagggtgttagtggctaggtatggtgcggcggatggtggtttggaggatgggggccggagttgttcatcttggtggcgggagatagtgaggattagggat 33170165  T
Q  135 ggg 137  Q
    |||    
T  33170164 ggg 33170162  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 42514323 - 42514237
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  42514323 ggtgttagtggctaggtatggtgtggaggatggcagtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgag 42514237  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 8299716 - 8299805
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||||||| ||||||||||||| |||||||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  8299716 tagggtgttgttggctaggtatggcgtggaggatggtggtttggaggatgggggccggagttgttctttgtggtggagggagattgtgag 8299805  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 42928737 - 42928648
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    ||||||||||||||||||||||| ||||| ||||||  |  |||||||||||||||| ||||||||||  |||||| || ||||||||||    
T  42928737 tagggtgttggtggctaggtatgatgtggcggatggaggtttggaggatgggggccggagttgttcttcgtggtggaggcagatagtgag 42928648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 30731858 - 30731937
Alignment:
Q  45 gtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    ||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  30731858 gtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcatggtggagggagattgtgag 30731937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 27116710 - 27116796
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| |||||||||||||| |||||||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  27116710 ggtgttagtggctaggtatggcgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagatcgtgag 27116796  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 35983328 - 35983414
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    ||||||||||||||||||||||| || ||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  35983328 ggtgttggtggctaggtatggtgaggcggatggaggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgag 35983414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 27796090 - 27796009
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggag 116  Q
    ||||||||||||||||||||||||||||| ||||||  |  |||||||||||||||  ||||||||||  |||||| |||||    
T  27796090 tagggtgttggtggctaggtatggtgtggcggatggtggtttggaggatgggggccagagttgttcttcgtggtggagggag 27796009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 23238986 - 23238900
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||| ||||||  |  |||||| ||||||||| |||||||| |  |||||| |||||||||||||    
T  23238986 ggtgttagtggctaggtatggtgtggcggatggaggtttggaggttgggggccggagttgttcgtcgtggtggagggagatagtgag 23238900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 27165525 - 27165573
Alignment:
Q  76 tggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||||    
T  27165525 tggaggatgggggccgaagttgttcttcttggtggagggagataatgag 27165573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 41590702 - 41590627
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 110  Q
    ||||||||||||||| |||||||||| |||||||||| || ||| || ||||||||| ||  |||||| |||||||    
T  41590702 tagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttgggggccggagaggttcttcttggtgg 41590627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 12825794 - 12825716
Alignment:
Q  46 tggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||||||||||||||||||||||  |  ||||||||||||| |  ||||||||||  |||||| ||||||| |||||    
T  12825794 tggctaggtatggtgtggaggatggcagtttggaggatgggggtcagagttgttcttcgtggtggagggagattgtgag 12825716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 4297843 - 4297918
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 110  Q
    ||||||||||||||| |||||||||| |||||||||| || ||| || ||||| ||| ||  |||||| |||||||    
T  4297843 tagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttggggcccggagaggttcttcttggtgg 4297918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 10780807 - 10780740
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttctt 102  Q
    |||||||||| ||||||||||||| |||| ||||||  |  |||||||||||||||| ||||| ||||    
T  10780807 tagggtgttgttggctaggtatggagtggcggatggtggtttggaggatgggggccggagttgctctt 10780740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 36256384 - 36256309
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 110  Q
    |||||||||||| | ||| ||||||||   ||||||| || |||||||||||||||| ||| |||||| |||||||    
T  36256384 tagggtgttggttgttagatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtgg 36256309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 22094825 - 22094887
Alignment:
Q  76 tggaggatgggggccgaagttgttcttgttggtggtgggagatagtgagaatccgggatgggg 138  Q
    |||||||||||||||||||||||||||  |||||| ||||| | | ||||||  |||||||||    
T  22094825 tggaggatgggggccgaagttgttcttcgtggtggcgggaggtggggagaattagggatgggg 22094887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 12870289 - 12870260
Alignment:
Q  13 catcagatcaaaggctgagatttagggtgt 42  Q
    ||||||||||||||||||||||||||||||    
T  12870289 catcagatcaaaggctgagatttagggtgt 12870260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 15862211 - 15862292
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggag 116  Q
    |||||||||| | |||||||||||||  |||| ||||||| |||||| ||||||  | |||||||| | ||||||| |||||    
T  15862211 tagggtgttgattgctaggtatggtgaagaggctgggcggttggaggttgggggatggagttgttcgtattggtggagggag 15862292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 27165502 - 27165535
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatggg 71  Q
    |||||||||||||||||||| |||||||||||||    
T  27165502 ggtgttggtggctaggtatgttgtggaggatggg 27165535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 42039239 - 42039320
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggag 116  Q
    ||||||||||||||| |  ||||||| || || ||||||| |||||||||||||||| |||  || || ||||||| |||||    
T  42039239 tagggtgttggtggcgaaatatggtgaggtggttgggcggttggaggatgggggccggagtgctttttcttggtggagggag 42039320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 25856973 - 25857009
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatggg 71  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  25856973 tagggtgttgttggctaggtatggcgtggaggatggg 25857009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 25856999 - 25857047
Alignment:
Q  76 tggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  25856999 tggaggatgggggccggagttgttctttgtggtggagggagattgtgag 25857047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 19891283 - 19891197
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 121  Q
    |||||||||||||||||||||||||||||  |||||  |  |||||||||||||||||||||||||||  |||||| ||||||||||    
T  19891283 tagggtgttggtggctaggtatggtgtggcagatggtggtttggaggatgggggccgaagttgttcttcgtggtggagggagatagt 19891197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 2364880 - 2364794
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  2364880 ggtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgag 2364794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 48569573 - 48569659
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 121  Q
    ||||||||||||||||||||||||||||| ||||||  |  ||||||||||||||||||| |||||||  |||| | ||||||||||    
T  48569573 tagggtgttggtggctaggtatggtgtggcggatggtggtttggaggatgggggccgaagctgttcttcgtggtagagggagatagt 48569659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 962697 - 962799
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgagaatccgggat 134  Q
    ||||||||| |||||||||||||||| || ||||||  |  ||||||||||||| || |||||||| | ||||||| ||||||||||||| ||  |||||    
T  962697 tagggtgttagtggctaggtatggtggggcggatggtggtttggaggatgggggtcggagttgttcatcttggtggagggagatagtgaggattagggat 962796  T
Q  135 ggg 137  Q
    |||    
T  962797 ggg 962799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 10323108 - 10323194
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||||||||||  |  |||||||||||||||| |||| |||||  |||||| ||||||| |||||    
T  10323108 ggtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttattcttcgtggtggagggagattgtgag 10323194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 19919766 - 19919852
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| |||||||||||||||||||||||||   |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  19919766 ggtgttagtggctaggtatggtgtggaggatgacggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgag 19919852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 34332352 - 34332438
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||| ||||||  |  |||||||||||||| | ||||||||||  |||||| |||||||||||||    
T  34332352 ggtgttagtggctaggtatggtgtggcggatggaggtttggaggatgggggcgggagttgttcttcgtggtggagggagatagtgag 34332438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 12341789 - 12341872
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagat 118  Q
    |||||||||| ||||||||||||| |||||||||||  |  |||||||||||||||| ||||| ||||  |||||| |||||||    
T  12341789 tagggtgttgttggctaggtatggcgtggaggatggtggtttggaggatgggggccggagttgctcttcgtggtggagggagat 12341872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 52250658 - 52250733
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 110  Q
    ||||||||||||||| || ||||||| |||||||||| || |||||| ||||||||| ||| |||||| |||||||    
T  52250658 tagggtgttggtggcgagatatggtgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtgg 52250733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 3141457 - 3141368
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    ||||||||| |||||||||||||||| || ||||||     |||||||||||||||| | |||||| | ||||||| |||||||||||||    
T  3141457 tagggtgttagtggctaggtatggtgcggcggatggtgatttggaggatgggggccggaattgttcatcttggtggcgggagatagtgag 3141368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 8130557 - 8130482
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 110  Q
    |||||||||||| |||||||||||||||   |||||| || |||||| ||||||||| ||| |||||| |||||||    
T  8130557 tagggtgttggttgctaggtatggtgtgcgtgatgggaggttggaggttgggggccggagtggttctttttggtgg 8130482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 16179550 - 16179464
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||| ||||||||||| || | |||  |  |||||||||||||||| |||||||||| ||||||| ||||||| |||||    
T  16179550 ggtgttagtggcgaggtatggtgtagacggtggaggtttggaggatgggggccggagttgttcttcttggtggcgggagattgtgag 16179464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 20531588 - 20531677
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgagaat 127  Q
    ||||||||| |||||||||| || |||||||||  |  |||| ||||||||  | |||| ||||| ||||||| ||||||||||||||||    
T  20531588 ggtgttggtagctaggtatgctgcggaggatggaggtttggaagatgggggttggagttattcttcttggtggagggagatagtgagaat 20531677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 6825428 - 6825372
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccg 91  Q
    |||||||||||||||  ||||||||| |||||||||| || ||| || |||||||||    
T  6825428 tagggtgttggtggcgcggtatggtgaggaggatgggaggttggcggttgggggccg 6825372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 10922140 - 10922067
Alignment:
Q  54 tatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgagaat 127  Q
    |||||||||||||||||  ||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||||    
T  10922140 tatggtgtggaggatggaaggctgaaggatgggggccggagttgttcttcttggtggagggagatagtgagaat 10922067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 17605868 - 17605957
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||||||| ||||||||||||| |||||||||||  |  |||||||||||||||| |||||||||| || |||| ||||||| |||||    
T  17605868 tagggtgttgttggctaggtatggcgtggaggatggtggtttggaggatgggggccggagttgttcttctttgtggagggagattgtgag 17605957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 18682111 - 18682196
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtga 123  Q
    |||||||||||| |||||||||  |||||||||  |  |||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  18682111 ggtgttggtggccaggtatggttcggaggatggaggtttggaggatgggggccggagttgttcttcttggtggcgggagatagtga 18682196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 14372528 - 14372611
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 121  Q
    |||||||||||||||||||||||||| ||| |   |  |||||||||||||||| |||||||||| ||||||| ||||||||||    
T  14372528 ggtgttggtggctaggtatggtgtggcggacgaaagtttggaggatgggggccggagttgttcttcttggtggagggagatagt 14372611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 2554209 - 2554123
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||| ||||||  |  |||||||||||||||| ||||||||||  |||||| |||||||| ||||    
T  2554209 ggtgttagtggctaggtatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcgtggtggagggagataatgag 2554123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 10576784 - 10576870
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 121  Q
    |||||||||| |||||||||||||||||| ||||||  |  |||||||||||||||| ||||| ||||  |||||| ||||||||||    
T  10576784 tagggtgttgttggctaggtatggtgtggcggatggtggtttggaggatgggggccggagttgctcttcgtggtggagggagatagt 10576870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 13938325 - 13938236
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    ||||||||| |||||||||||||||| || ||||||  |  |||||||||||||||| |||||||| | |||||||  ||||||||||||    
T  13938325 tagggtgttagtggctaggtatggtgcggcggatggtggtttggaggatgggggccggagttgttcatcttggtggcaggagatagtgag 13938236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 5042066 - 5041980
Alignment:
Q  91 gaagttgttcttgttggtggtgggagatagtgagaatccgggatggggttgaaggtaggagtgatgggtggtttgcgtcgtgtgtgtc 178  Q
    |||||| ||||| ||||||| ||||||||||||||||||| |||||||| ||||||||  |||| ||||||||||   ||||||||||    
T  5042066 gaagttattctttttggtggagggagatagtgagaatccgagatggggtagaaggtagtcgtga-gggtggtttgttgcgtgtgtgtc 5041980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 17577252 - 17577335
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagat 118  Q
    |||||||||| ||||||||||||| ||||||||||   |  |||||||||||||||  ||||||||||  |||||| |||||||    
T  17577252 tagggtgttgttggctaggtatggcgtggaggatgatggtttggaggatgggggccagagttgttctttgtggtggagggagat 17577335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 5085601 - 5085641
Alignment:
Q  76 tggaggatgggggccgaagttgttcttgttggtggtgggag 116  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  5085601 tggaggatgggggccgaagttgttcttcttggtggcgggag 5085641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 15602927 - 15602855
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 110  Q
    ||||||||| |||||||||||||||   |||||| || |||||||||||||||| ||| |||||  |||||||    
T  15602927 ggtgttggttgctaggtatggtgtgcgtgatgggaggttggaggatgggggccggagtggttctatttggtgg 15602855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 15956528 - 15956561
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatggg 71  Q
    |||||||||||||||||||||||||| |||||||    
T  15956528 ggtgttggtggctaggtatggtgtggcggatggg 15956561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 18588951 - 18588902
Alignment:
Q  39 gtgttggtggctaggtatggtgtggaggatgggcggctggaggatggggg 88  Q
    |||||||||||||| ||||||| |||||| ||| || |||||||||||||    
T  18588951 gtgttggtggctagatatggtgaggaggacgggaggttggaggatggggg 18588902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 24767004 - 24767065
Alignment:
Q  76 tggaggatgggggccgaagttgttcttgttggtggtgggagatagtgagaatccgggatggg 137  Q
    ||||||||||||| || ||||||||||  |||||| ||||||||||||| ||  ||||||||    
T  24767004 tggaggatgggggtcggagttgttcttcgtggtggagggagatagtgaggattagggatggg 24767065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 26514326 - 26514245
Alignment:
Q  39 gtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatag 120  Q
    |||||||||||| ||||||||| |||||  ||| |  |||||| ||||||||| ||| |||||  ||||||| |||||||||    
T  26514326 gtgttggtggctcggtatggtgaggaggcagggagtttggaggttgggggccggagtggttctatttggtggagggagatag 26514245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 503107 - 503147
Alignment:
Q  76 tggaggatgggggccgaagttgttcttgttggtggtgggag 116  Q
    |||||||||||||||| |||||||||| ||||||| |||||    
T  503107 tggaggatgggggccggagttgttcttcttggtggcgggag 503147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 8264788 - 8264748
Alignment:
Q  76 tggaggatgggggccgaagttgttcttgttggtggtgggag 116  Q
    |||||||||||||||| |||||||||| ||||||| |||||    
T  8264788 tggaggatgggggccggagttgttcttcttggtggcgggag 8264748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 21629656 - 21629692
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatggg 71  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  21629656 tagggtgttgttggctaggtatggcgtggaggatggg 21629692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 24766951 - 24766983
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgg 70  Q
    |||||||||||||||||||||||||| ||||||    
T  24766951 ggtgttggtggctaggtatggtgtggcggatgg 24766983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 123
Target Start/End: Complemental strand, 32186289 - 32186201
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtga 123  Q
    ||||||||||||||| || ||| ||| || || |||| || |||||| ||||||||| |||  ||||| ||||||| ||||| ||||||    
T  32186289 tagggtgttggtggcgagatatagtgaggtggctgggaggttggaggttgggggccggagtgcttcttcttggtggagggaggtagtga 32186201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 105380 - 105466
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  105380 ggtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgag 105466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 6051206 - 6051120
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  6051206 ggtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgag 6051120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 47622614 - 47622700
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||||||||||||||||||||||| ||||||  |  |||||||| ||||||| |||||||||| ||||||| | |||||||||||    
T  47622614 ggtgttggtggctaggtatggtgtggtggatggaggtttggaggataggggccggagttgttcttcttggtggagagagatagtgag 47622700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 12606577 - 12606606
Alignment:
Q  13 catcagatcaaaggctgagatttagggtgt 42  Q
    ||||||||||||||||||||||||||||||    
T  12606577 catcagatcaaaggctgagatttagggtgt 12606606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 35541637 - 35541604
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatggg 71  Q
    |||||| |||||||||||||||||||||||||||    
T  35541637 ggtgttagtggctaggtatggtgtggaggatggg 35541604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 35541614 - 35541566
Alignment:
Q  76 tggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  35541614 tggaggatgggggccggagttgttcttcgtggtggagggagatcgtgag 35541566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 3855 - 3769
Alignment:
Q  38 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 124  Q
    |||||| ||||||||||||||||||  ||||||  |  |||||| ||||||||| |||||||| |  |||||| |||||||||||||    
T  3855 ggtgttagtggctaggtatggtgtgacggatggaggtttggaggttgggggccggagttgttcgtcgtggtggagggagatagtgag 3769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 5375 - 5346
Alignment:
Q  13 catcagatcaaaggctgagatttagggtgt 42  Q
    ||||||||||||||||||||||||||||||    
T  5375 catcagatcaaaggctgagatttagggtgt 5346  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 67686 - 67606
Alignment:
Q  35 tagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtggga 115  Q
    |||||||||| |  |||||||||||| |||||  ||| || |||||| ||||||| | ||| |||||| ||||||||||||    
T  67686 tagggtgttgatttctaggtatggtgaggaggcagggaggttggaggttgggggctggagtggttcttcttggtggtggga 67606  T

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