View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_539 (Length: 209)
Name: NF7829A_low_539
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_539 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 49023703 - 49023526
Alignment:
| Q |
18 |
aatatcatagaaatgaaaggcatcaaaaatttcattagtgcaattaacaataaaaaatgaaaatttctagaaacccaacaacaaaagccctaagatttaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49023703 |
aatatcatagaaatgaaaggcatcaaaaatttcattagtgcaattaacaataaaaaatgaaaatttttagaaacccaacaacaaaagccctaagatttaa |
49023604 |
T |
|
| Q |
118 |
aagatctaaaccaaacccatcacagaaaatcagaaataataatgaatgagaaacacaaacctatgataaacatgatgt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49023603 |
aagatctaaaccaaacccatcacagaaaatcagaaataataatgaatgagaaacacaaacctatgataaacttgatgt |
49023526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University