View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_540 (Length: 208)
Name: NF7829A_low_540
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_540 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 39080913 - 39080749
Alignment:
| Q |
22 |
gaatcatagagatgtgaaatgggatgaaatcatttaaagagattgagaattgagggtagaactcaagaaaaattatattaaaattgatgatgatcagtga |
121 |
Q |
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| T |
39080913 |
gaatcaaagagatgtgaaatgggatgaaatcatttaaagagattgagaattgagggtagaactcaagaaaaattatattaaaattgataatgatcagtga |
39080814 |
T |
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| Q |
122 |
tacaactatatacaaggatataatatatatttagagcttattaggaacctaatacataaagacct |
186 |
Q |
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| T |
39080813 |
tacaactatatacaaggatataatatatatttagagcttattaggaacataatacataaagacct |
39080749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 39090275 - 39090169
Alignment:
| Q |
23 |
aatcatagagatgtgaaatgggatgaaatcatttaaagagattgagaattgagggtagaactcaagaaaaattatattaaaattgatgatgatcagtgat |
122 |
Q |
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| T |
39090275 |
aatcaaagagaggtgaaatggtaggaaatcatttaaagagattgagagttgagggtggaactcaagaaaaagtatattgaaattgatgatga--agtgat |
39090178 |
T |
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| Q |
123 |
acaactata |
131 |
Q |
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| T |
39090177 |
acaactata |
39090169 |
T |
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