View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_547 (Length: 205)
Name: NF7829A_low_547
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_547 |
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| [»] scaffold0175 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 38 - 193
Target Start/End: Original strand, 31502655 - 31502810
Alignment:
| Q |
38 |
agtaaaaagaagagtaaaatgcacataagaggtagtgtgtacttccacattttataagtgcaattccaaaggaaagagcttgaaatatatatggatcatc |
137 |
Q |
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| T |
31502655 |
agtaaaaagaagagtaaaatgcacataaaaggtagtgtgtacttccacattttataagtgcaattccaaaggaaagagcttgaaatatatatggatcatc |
31502754 |
T |
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| Q |
138 |
acacaagactttatgcggtatagacatgtcccatcttatattgatatattcttgga |
193 |
Q |
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| T |
31502755 |
acacaagactttatacggtgtagacatgtcccatcctatattgatatattattgga |
31502810 |
T |
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Target: chr2 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 38 - 193
Target Start/End: Complemental strand, 29276331 - 29276168
Alignment:
| Q |
38 |
agtaaaaagaagagtaaaatgcacataagaggtagtgtgtacttccacattttataagtgcaat----------tccaaaggaaagagcttgaaatatat |
127 |
Q |
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| T |
29276331 |
agtaaaaagaagagtaaaatgcacacaaagggtagtgtgtatttgtacatttaataagtgcaatagtatcatattcctaagggaagagcttgaaatatat |
29276232 |
T |
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| Q |
128 |
atggatcatcacacaagactttatgcggtatagacatgtcccatcttatattgatatattcttgga |
193 |
Q |
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| T |
29276231 |
atggatcatcaca--agactttatacggtatagacatgtcccatcttatattgatatattattgga |
29276168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 55858267 - 55858418
Alignment:
| Q |
44 |
aagaagagtaaaatgcacataagaggtagtgtgtacttccacattttataagtgcaat----------tccaaaggaaagagcttgaaatatatatggat |
133 |
Q |
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| T |
55858267 |
aagaagagtaaaatgcacacaaagggtagtgtgtatttgtacatttaataagtgcaatagtatcatattcctaaggtaagagcttgaaatatatatggat |
55858366 |
T |
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| Q |
134 |
catcacacaagactttatgcggtatagacatgtcccatcttatattgatatatt |
187 |
Q |
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| T |
55858367 |
catcaca--agactttatacggtatagacatgtcccatcttatattgatatatt |
55858418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 27919 - 27959
Alignment:
| Q |
38 |
agtaaaaagaagagtaaaatgcacataagaggtagtgtgta |
78 |
Q |
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| T |
27919 |
agtaaaaagaagagtaaaatgcacataaaaggtagtgtgta |
27959 |
T |
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