View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_55 (Length: 411)
Name: NF7829A_low_55
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_55 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 17584596 - 17585008
Alignment:
| Q |
1 |
aatatcataaaaaagcagtatatgcacagctcatcaggaggagccgtcgcattagtgcatttaaaggaatctatggaaaggctaaaattagctagccgat |
100 |
Q |
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| T |
17584596 |
aatatcataaaaaagtagtatatgcacagctcatcaggaggagccgtcacattagtgcatttaaaggaatctatggaaaggctaaaattagctagccgat |
17584695 |
T |
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| Q |
101 |
tagcacaatggttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagacgttgaatgtgccgcattgaagtaggaaccaccacc |
200 |
Q |
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| T |
17584696 |
tagcacaacggttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagatgttgaatgtgccgcattgaagtaggaaccaccacc |
17584795 |
T |
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| Q |
201 |
ctaaattttcaattatctgtaaccatgtctaaaagaattttagagtccttgggttggatattacggtgaagcgattgagtagagcaactattgattactt |
300 |
Q |
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| T |
17584796 |
ctaaattttcaattatctgtaaccatgtctaaaagaattttagagtccttgggttggatattacggtgaagcaattgagtagagcaactattgattactt |
17584895 |
T |
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| Q |
301 |
ttgagaaattctggattgtcaaaacatgtacaac--atattctagaaatccatatttttgctttgtttttagaaagagattagaagctaagtgtgtctcc |
398 |
Q |
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| T |
17584896 |
ttgagaaattctggattgtcaaaacatgtacaacatatattctagaaatccatatttttgctttgtttttaaaaagagattagaagctaagtgtgtctcc |
17584995 |
T |
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| Q |
399 |
taaaacttcatga |
411 |
Q |
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| T |
17584996 |
taaaacttcatga |
17585008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 14742482 - 14742262
Alignment:
| Q |
1 |
aatatcataaaaaagcagtatatgcacagctcatcaggaggagccgtcgcattagtgcatttaaaggaatctatggaaaggctaaaattagctagccgat |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14742482 |
aatatcataaaaaagtagtatatgcacagctcatcaggaggagccgtcgcattagtgcatttaaaggaatctatggaaaggctaaaatttgctagccgat |
14742383 |
T |
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| Q |
101 |
tagcacaatggttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagacgttgaatgtgccgcattgaagtaggaaccaccacc |
200 |
Q |
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| T |
14742382 |
tagcacaacggttttcgtccttcaa----gacagaactgaacatgccaatataaagccaaaagacattgaatgtgccgcattgaagtaggaaccaccacc |
14742287 |
T |
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| Q |
201 |
ctaaattttcaattatctgtaacca |
225 |
Q |
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| T |
14742286 |
ctaaattttcaattatctgtaacca |
14742262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 216 - 411
Target Start/End: Complemental strand, 14741386 - 14741188
Alignment:
| Q |
216 |
tctgtaaccatgtctaaaagaattttagagtccttgggttggatattacggtgaagcgattgagtagagcaactattgattacttttgagaaattctgga |
315 |
Q |
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| T |
14741386 |
tctgtaaccatgtctaaaagaattttagagtccttgagttggatattacggtgaagcgattgagtagagcaactattgattacttttgagaaattctgga |
14741287 |
T |
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| Q |
316 |
ttgtcaaaacatgt-acaac--atattctagaaatccatatttttgctttgtttttagaaagagattagaagctaagtgtgtctcctaaaacttcatga |
411 |
Q |
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| T |
14741286 |
ttgtcaaaacatgtaacaacatatattctagaaatccatatttttgctttgtttttaaaaagagattagaagctaagtgtgtctcctaaaacttcatga |
14741188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 38929841 - 38929922
Alignment:
| Q |
78 |
aaggctaaaattagctagccgattagcacaatggttt-tcttccttcaagtatgacagaactgaacatgccaatataaagcc |
158 |
Q |
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|||||||||||||| ||||| || ||||||| |||| | ||||| |||||||||| ||||||||||| |||| ||||||| |
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| T |
38929841 |
aaggctaaaattagttagccaatcagcacaacagtttcttttcctccaagtatgacgaaactgaacatgtcaatctaaagcc |
38929922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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