View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_552 (Length: 203)
Name: NF7829A_low_552
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_552 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 3923726 - 3923887
Alignment:
| Q |
20 |
atgaaagatgcaggtgggtgaattctaattttcttcctaaatatgacataatggtatttggatggttcctcatctatgcatttgcaattgtaattttgtt |
119 |
Q |
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| T |
3923726 |
atgaaagatgcaggtgggtgaattctaattttcttcctaaatatgacataatggtatttggatggttcctcatctatgcatttgcaattgtaattttgtt |
3923825 |
T |
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| Q |
120 |
atagatagagtgggaagtcacattgtaagaaatagagtttacgtgtggttgatgaagtttct |
181 |
Q |
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| T |
3923826 |
atagatagagtgggaagtcacattgtaagaaatagagtttacgtgtggttgatgaagtttct |
3923887 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 7421304 - 7421245
Alignment:
| Q |
27 |
atgcaggtgggtgaattctaattttcttcctaaatatgacataatggtatttggatggtt |
86 |
Q |
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| T |
7421304 |
atgctggtggttgaattctaattttcttccaaaatatcacatcatggtatttgggtggtt |
7421245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 14202120 - 14202065
Alignment:
| Q |
23 |
aaagatgcaggtgggtgaattctaattttcttcctaaatatgacataatggtattt |
78 |
Q |
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| T |
14202120 |
aaagatgctagtggttgaattctaaatttcttcctaaatatgacatcatggtattt |
14202065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 13574018 - 13573961
Alignment:
| Q |
23 |
aaagatgcaggtgggtgaattctaattttcttcctaaatatgacataatggtatttgg |
80 |
Q |
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| T |
13574018 |
aaagatgctggtggttgaattctaattttcttccttaatataatatcatgctatttgg |
13573961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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