View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_554 (Length: 201)

Name: NF7829A_low_554
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_554
NF7829A_low_554
[»] chr8 (36 HSPs)
chr8 (13-186)||(11251202-11251375)
chr8 (13-186)||(44493258-44493431)
chr8 (13-186)||(21967119-21967291)
chr8 (13-186)||(21979843-21980016)
chr8 (13-186)||(21984826-21984999)
chr8 (13-186)||(34950901-34951079)
chr8 (13-186)||(21329425-21329598)
chr8 (13-184)||(21999866-22000036)
chr8 (25-146)||(22996255-22996376)
chr8 (26-146)||(22252755-22252875)
chr8 (25-146)||(37516093-37516215)
chr8 (25-146)||(2418465-2418586)
chr8 (25-146)||(20501691-20501812)
chr8 (25-141)||(22525905-22526022)
chr8 (25-146)||(22963029-22963150)
chr8 (25-146)||(23668198-23668318)
chr8 (25-146)||(16799899-16800021)
chr8 (25-141)||(17085770-17085886)
chr8 (25-146)||(40492441-40492563)
chr8 (25-141)||(14102820-14102935)
chr8 (28-183)||(19929185-19929340)
chr8 (25-141)||(22419009-22419126)
chr8 (29-182)||(31722926-31723079)
chr8 (23-183)||(13661280-13661440)
chr8 (23-183)||(13719923-13720083)
chr8 (25-146)||(13507675-13507796)
chr8 (25-146)||(13597207-13597328)
chr8 (25-146)||(19154475-19154596)
chr8 (47-120)||(22385375-22385448)
chr8 (25-146)||(17266582-17266703)
chr8 (27-146)||(28397963-28398079)
chr8 (29-77)||(20879179-20879227)
chr8 (25-141)||(24353434-24353550)
chr8 (131-183)||(36727470-36727522)
chr8 (95-146)||(37116828-37116879)
chr8 (29-79)||(17218171-17218221)
[»] chr6 (24 HSPs)
chr6 (13-186)||(9621968-9622141)
chr6 (25-146)||(23527716-23527837)
chr6 (92-186)||(25738853-25738947)
chr6 (25-146)||(18204490-18204611)
chr6 (26-146)||(17229526-17229646)
chr6 (27-146)||(17106124-17106243)
chr6 (25-146)||(18177260-18177381)
chr6 (25-146)||(20224354-20224475)
chr6 (25-146)||(22118338-22118459)
chr6 (25-145)||(18453593-18453713)
chr6 (25-146)||(18199024-18199146)
chr6 (27-124)||(20137061-20137158)
chr6 (27-124)||(22195711-22195808)
chr6 (25-141)||(18696897-18697013)
chr6 (25-145)||(16245737-16245858)
chr6 (47-146)||(23539350-23539449)
chr6 (25-146)||(35008560-35008681)
chr6 (50-141)||(18706673-18706764)
chr6 (25-146)||(18895925-18896047)
chr6 (29-183)||(31732314-31732468)
chr6 (23-135)||(19023781-19023893)
chr6 (28-124)||(23077145-23077241)
chr6 (29-77)||(10445733-10445781)
chr6 (98-183)||(23501258-23501343)
[»] scaffold0301 (3 HSPs)
scaffold0301 (13-186)||(11740-11913)
scaffold0301 (13-186)||(14892-15065)
scaffold0301 (13-186)||(16140-16313)
[»] scaffold0016 (2 HSPs)
scaffold0016 (13-186)||(172485-172658)
scaffold0016 (25-146)||(119217-119338)
[»] scaffold0015 (1 HSPs)
scaffold0015 (13-186)||(209322-209494)
[»] scaffold0098 (2 HSPs)
scaffold0098 (13-183)||(24608-24779)
scaffold0098 (13-183)||(35478-35649)
[»] chr7 (18 HSPs)
chr7 (25-186)||(13892982-13893143)
chr7 (25-181)||(9725234-9725391)
chr7 (25-146)||(11768529-11768650)
chr7 (25-146)||(130404-130525)
chr7 (25-146)||(16996610-16996731)
chr7 (25-141)||(42462339-42462455)
chr7 (25-146)||(9032934-9033055)
chr7 (25-146)||(9177255-9177376)
chr7 (25-146)||(16092126-16092248)
chr7 (26-146)||(14045159-14045279)
chr7 (26-146)||(14355189-14355309)
chr7 (26-146)||(1867652-1867772)
chr7 (26-138)||(12901740-12901852)
chr7 (29-77)||(36301127-36301175)
chr7 (95-146)||(2529643-2529694)
chr7 (25-70)||(15202670-15202715)
chr7 (29-77)||(14219435-14219483)
chr7 (29-77)||(15096107-15096155)
[»] scaffold0001 (3 HSPs)
scaffold0001 (13-186)||(162649-162822)
scaffold0001 (25-146)||(497814-497935)
scaffold0001 (25-146)||(446883-447004)
[»] chr2 (13 HSPs)
chr2 (25-146)||(18546554-18546675)
chr2 (26-183)||(34137331-34137488)
chr2 (25-130)||(23287752-23287857)
chr2 (25-146)||(21243062-21243182)
chr2 (25-146)||(39827605-39827727)
chr2 (25-146)||(43946959-43947080)
chr2 (25-138)||(20519790-20519903)
chr2 (25-146)||(23005138-23005260)
chr2 (29-77)||(23799842-23799890)
chr2 (25-77)||(26392792-26392844)
chr2 (25-146)||(19672236-19672357)
chr2 (25-138)||(22412733-22412846)
chr2 (29-77)||(19646744-19646792)
[»] chr5 (16 HSPs)
chr5 (26-146)||(15796832-15796952)
chr5 (25-146)||(20572277-20572398)
chr5 (25-146)||(25574059-25574180)
chr5 (25-146)||(25575252-25575373)
chr5 (25-146)||(25576445-25576566)
chr5 (25-146)||(25744132-25744253)
chr5 (25-146)||(26740237-26740358)
chr5 (25-146)||(27988518-27988639)
chr5 (25-146)||(26732424-26732545)
chr5 (38-145)||(23475884-23475992)
chr5 (25-146)||(23470191-23470313)
chr5 (24-146)||(20026529-20026651)
chr5 (25-146)||(22177809-22177930)
chr5 (28-183)||(10953556-10953712)
chr5 (29-76)||(21503654-21503701)
chr5 (29-77)||(20469546-20469594)
[»] chr1 (17 HSPs)
chr1 (25-146)||(21533484-21533606)
chr1 (25-146)||(48520978-48521099)
chr1 (25-145)||(21042940-21043060)
chr1 (25-124)||(22124696-22124795)
chr1 (25-146)||(16381574-16381695)
chr1 (25-146)||(52940467-52940588)
chr1 (25-146)||(21683407-21683529)
chr1 (26-146)||(27652811-27652931)
chr1 (25-146)||(16367876-16367997)
chr1 (25-116)||(20346214-20346305)
chr1 (48-146)||(16093482-16093580)
chr1 (25-146)||(20958497-20958619)
chr1 (25-146)||(47191012-47191134)
chr1 (25-146)||(50613706-50613827)
chr1 (25-146)||(50621534-50621655)
chr1 (28-141)||(50687005-50687118)
chr1 (29-77)||(35893764-35893812)
[»] scaffold2080 (1 HSPs)
scaffold2080 (25-146)||(351-472)
[»] scaffold0074 (2 HSPs)
scaffold0074 (28-146)||(8574-8692)
scaffold0074 (32-146)||(2615-2729)
[»] chr4 (17 HSPs)
chr4 (25-181)||(13591501-13591658)
chr4 (30-146)||(152484-152600)
chr4 (25-146)||(15792185-15792306)
chr4 (25-146)||(32306585-32306706)
chr4 (25-146)||(40907462-40907583)
chr4 (25-146)||(26050085-26050206)
chr4 (26-146)||(14852464-14852584)
chr4 (28-146)||(16043426-16043544)
chr4 (25-183)||(27996302-27996460)
chr4 (25-122)||(14651091-14651188)
chr4 (25-146)||(26789748-26789869)
chr4 (33-183)||(50160558-50160709)
chr4 (29-77)||(10273138-10273186)
chr4 (29-77)||(14477174-14477222)
chr4 (25-77)||(19738637-19738689)
chr4 (25-120)||(15365535-15365630)
chr4 (37-77)||(9622034-9622074)
[»] chr3 (21 HSPs)
chr3 (25-146)||(37428104-37428225)
chr3 (13-119)||(16839288-16839394)
chr3 (25-124)||(15246431-15246530)
chr3 (25-124)||(15207349-15207448)
chr3 (27-140)||(9578014-9578127)
chr3 (25-146)||(23275075-23275196)
chr3 (25-124)||(15265552-15265651)
chr3 (25-146)||(32402568-32402691)
chr3 (25-146)||(316529-316651)
chr3 (114-186)||(16828707-16828779)
chr3 (25-146)||(605957-606078)
chr3 (25-141)||(23318333-23318448)
chr3 (25-146)||(23412839-23412961)
chr3 (29-77)||(6156489-6156537)
chr3 (30-77)||(21845903-21845950)
chr3 (29-75)||(25201651-25201697)
chr3 (31-77)||(48043967-48044013)
chr3 (29-77)||(12917802-12917850)
chr3 (29-77)||(15025552-15025600)
chr3 (33-77)||(45803816-45803860)
chr3 (29-77)||(48630961-48631009)
[»] scaffold0780 (1 HSPs)
scaffold0780 (25-146)||(2938-3059)
[»] scaffold0077 (1 HSPs)
scaffold0077 (25-146)||(55274-55395)
[»] scaffold0011 (1 HSPs)
scaffold0011 (25-146)||(37743-37864)
[»] scaffold0004 (1 HSPs)
scaffold0004 (25-146)||(332726-332847)
[»] scaffold1419 (1 HSPs)
scaffold1419 (25-146)||(433-554)
[»] scaffold0282 (1 HSPs)
scaffold0282 (29-146)||(17777-17894)
[»] scaffold0040 (2 HSPs)
scaffold0040 (25-146)||(13729-13850)
scaffold0040 (25-146)||(22606-22727)
[»] scaffold0054 (1 HSPs)
scaffold0054 (25-124)||(75460-75559)
[»] scaffold0914 (1 HSPs)
scaffold0914 (25-146)||(2115-2236)
[»] scaffold0750 (1 HSPs)
scaffold0750 (25-146)||(4006-4127)
[»] scaffold0108 (1 HSPs)
scaffold0108 (25-146)||(3566-3687)
[»] scaffold0106 (1 HSPs)
scaffold0106 (25-146)||(19257-19378)
[»] scaffold0347 (1 HSPs)
scaffold0347 (26-146)||(9299-9419)
[»] scaffold0485 (1 HSPs)
scaffold0485 (25-123)||(10539-10637)
[»] scaffold0293 (1 HSPs)
scaffold0293 (65-183)||(17933-18051)
[»] scaffold0014 (1 HSPs)
scaffold0014 (25-146)||(206114-206236)
[»] scaffold0010 (2 HSPs)
scaffold0010 (25-123)||(1027-1125)
scaffold0010 (25-138)||(60312-60425)
[»] scaffold0005 (1 HSPs)
scaffold0005 (25-122)||(166104-166201)
[»] scaffold0356 (1 HSPs)
scaffold0356 (25-141)||(257-372)
[»] scaffold0076 (1 HSPs)
scaffold0076 (25-146)||(24186-24308)
[»] scaffold0107 (1 HSPs)
scaffold0107 (30-146)||(13994-14111)
[»] scaffold0012 (1 HSPs)
scaffold0012 (25-146)||(220795-220916)
[»] scaffold0009 (1 HSPs)
scaffold0009 (25-146)||(85955-86076)
[»] scaffold0561 (1 HSPs)
scaffold0561 (25-77)||(10883-10935)
[»] scaffold0169 (1 HSPs)
scaffold0169 (25-77)||(29103-29155)
[»] scaffold0716 (2 HSPs)
scaffold0716 (26-77)||(1459-1510)
scaffold0716 (98-146)||(1602-1650)
[»] scaffold0601 (1 HSPs)
scaffold0601 (25-146)||(7064-7185)
[»] scaffold0500 (1 HSPs)
scaffold0500 (28-146)||(7941-8055)
[»] scaffold0357 (1 HSPs)
scaffold0357 (25-146)||(3104-3225)
[»] scaffold0073 (1 HSPs)
scaffold0073 (25-146)||(57258-57378)
[»] scaffold0022 (1 HSPs)
scaffold0022 (25-146)||(80672-80793)
[»] scaffold1403 (1 HSPs)
scaffold1403 (25-141)||(960-1075)
[»] scaffold0123 (1 HSPs)
scaffold0123 (26-146)||(25517-25637)
[»] scaffold0065 (2 HSPs)
scaffold0065 (25-77)||(55410-55462)
scaffold0065 (28-142)||(52993-53107)
[»] scaffold0035 (2 HSPs)
scaffold0035 (29-77)||(39575-39623)
scaffold0035 (29-77)||(44257-44305)
[»] scaffold0260 (1 HSPs)
scaffold0260 (25-116)||(8537-8628)
[»] scaffold0042 (1 HSPs)
scaffold0042 (29-183)||(28858-29012)
[»] scaffold0338 (1 HSPs)
scaffold0338 (25-146)||(11177-11298)
[»] scaffold0859 (2 HSPs)
scaffold0859 (98-182)||(4338-4422)
scaffold0859 (29-77)||(4263-4311)
[»] scaffold0285 (1 HSPs)
scaffold0285 (29-77)||(19295-19343)
[»] scaffold0139 (1 HSPs)
scaffold0139 (26-138)||(38708-38820)
[»] scaffold1551 (1 HSPs)
scaffold1551 (25-120)||(307-402)
[»] scaffold0109 (1 HSPs)
scaffold0109 (95-141)||(35541-35587)
[»] scaffold0003 (1 HSPs)
scaffold0003 (47-179)||(95887-96019)
[»] scaffold0002 (1 HSPs)
scaffold0002 (95-183)||(398145-398233)


Alignment Details
Target: chr8 (Bit Score: 146; Significance: 4e-77; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 11251375 - 11251202
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaat 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11251375 cgaataaaatcagggtgctctcgggaacttcacctttttcacacaaaaattccatttttaacttctccataatgaatttcattctaaaaacctgcctaat 11251276  T
Q  113 cattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatgatg 186  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| |||||||| ||||    
T  11251275 cattcttatacacattctggcactcaaaaccatctaagacttgaccaacaacgttaattcgcaaaatcacgatg 11251202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 44493431 - 44493258
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaat 112  Q
    ||||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44493431 cgaataaaatcatggtgctctcaggaacttcaccttttccacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaat 44493332  T
Q  113 cattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatgatg 186  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||||    
T  44493331 cattcttatacacattctggcactcaaaaccatctaagacttgaccaacaacgttaatttacaaaatcatgatg 44493258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 21967291 - 21967119
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaat 112  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21967291 cgaataaaatcagggtgctctcgggaacttcaactttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaa-ctgcctaat 21967193  T
Q  113 cattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatgatg 186  Q
    ||||||||||||||||| |||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||    
T  21967192 cattcttatacacattccggcactcaaaaccatctaggacttgaccaacaacgttaattcacaaaatcatgatg 21967119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 21980016 - 21979843
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttttcacacaaaaa-tcccatttttaacttctccataatgaatttcattctaaaaacctgcctaa 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||    
T  21980016 cgaataaaatcagggtgctctcgggaacttcacctttttcacacaaaaaatctcatttttaacttctccataatgaatttcattctaaaaac-tgcctaa 21979918  T
Q  112 tcattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatgatg 186  Q
    |||||||||||||||||| |||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  21979917 tcattcttatacacattccggcactcaaaaccatctaagacttgaccaacaacgttaattcacaaaatcatgatg 21979843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 21984999 - 21984826
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttttcacacaaaaa-tcccatttttaacttctccataatgaatttcattctaaaaacctgcctaa 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||    
T  21984999 cgaataaaatcagggtgctctcgggaacttcacctttttcacacaaaaaatctcatttttaacttctccataatgaatttcattctaaaaac-tgcctaa 21984901  T
Q  112 tcattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatgatg 186  Q
    |||||||||||||||||| |||||||| ||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  21984900 tcattcttatacacattccggcactcataaccatctaagacttgaccaacaacgttaattcacaaaatcatgatg 21984826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 34950901 - 34951079
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttttcacacaaaa-----atcccatttttaacttctccataatgaatttcattctaaaaacctgc 107  Q
    ||||||| |||||||||| ||| |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||| |||    
T  34950901 cgaataaaatcagggtgccctcaggaacttcacctttttcacacaaaaaaaaaatcccatttttaacttctccataatgaatttcattctaaaaacttgc 34951000  T
Q  108 ctaatcattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatgatg 186  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| ||||||||||||    
T  34951001 ctaatcattcttatacacattctggcactcaaaaccatctaagacttgaccaacaacgttaattcagaaaatcatgatg 34951079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 21329425 - 21329598
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaat 112  Q
    ||||||| ||||| |||||||| ||||||| || ||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||    
T  21329425 cgaataaaatcagcgtgctctcaggaacttgacatttttcacacaaaaatcccatttttaacttccccgtaatgaatttcattctaaaaacttgcctaat 21329524  T
Q  113 cattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatgatg 186  Q
    ||||||||||||||||| |||||||||||||||| ||||||| |||||| || ||| |||||||||||||||||    
T  21329525 cattcttatacacattccggcactcaaaaccatctaagacttgaccaacaacattatttcacaaaatcatgatg 21329598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 22000036 - 21999866
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttttcacacaaaaa-tcccatttttaacttctccataatgaatttcattctaaaaacctgcctaa 111  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  22000036 cgaataaaatcagggtgctctctggaacttcacctttttcacacaaaaaatctcatttttaacttctcca-aatgaatttcattctaaaaac-tgcctaa 21999939  T
Q  112 tcattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatga 184  Q
    |||||||||||||||||| |||||||||||||||| ||||||| ||||||  |||||||||||||||||||||    
T  21999938 tcattcttatacacattccggcactcaaaaccatctaagacttgaccaacagcgttaattcacaaaatcatga 21999866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 22996255 - 22996376
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||||  ||||  | ||| ||| ||||||||| ||||||||||||||||||||    
T  22996255 gggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaactttcccatgttcaatctcaatctaaaaacttgcctaatcattcttataca 22996354  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| ||||||||||| ||||    
T  22996355 tattcaggcactcaaaatcatc 22996376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 22252875 - 22252755
Alignment:
Q  26 ggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacac 125  Q
    ||||||||||||||||| || |||||||| ||||||||||||||||||||||   ||  |  |||||| ||||||||| ||||||||||||||||||||     
T  22252875 ggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttccatatgttccatttcaatctaaaaacttgcctaatcattcttatacat 22252776  T
Q  126 attctggcactcaaaaccatc 146  Q
     ||  ||||||||||||||||    
T  22252775 gttaaggcactcaaaaccatc 22252755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 37516093 - 37516215
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaa-tttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||||||||||| || ||||||||  ||||||| |||||||||||||||||   | || ||||| ||||||||| ||||||||||||||||||     
T  37516093 gggtgctctcgggaacttgacatttttcacctaaaaatctcatttttaacttctccaggttcaattttcaatctaaaaacttgcctaatcattcttataa 37516192  T
Q  124 acattctggcactcaaaaccatc 146  Q
    | |||  ||||||||||||||||    
T  37516193 atattaaggcactcaaaaccatc 37516215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 2418586 - 2418465
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||| || || || |||||||| |||||||  ||||||||||||  |||   | ||||||| ||||||||| ||||||||||||||||||||    
T  2418586 gggtgctctcggaaatttgacatttttcacccaaaaatatcatttttaactttcccaggttcaatttcaatctaaaaacttgcctaatcattcttataca 2418487  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| ||||||||||||||||    
T  2418486 tattcaggcactcaaaaccatc 2418465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 20501812 - 20501691
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||| |||| || || |||||||| |||||||||| ||||||| ||| ||||  | ||||||| ||||||||| ||||||||||||||||||||    
T  20501812 gggtgctctcaggaatttgacatttttcacccaaaaatcccgtttttaatttccccatgttcaatttcaatctaaaaacttgcctaatcattcttataca 20501713  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| ||||| ||||||||||    
T  20501712 tgttcaggcacccaaaaccatc 20501691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 22525905 - 22526022
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaa-cttctccataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||| |||  |||   | ||||||| ||||| ||| |||||||||||||||||||    
T  22525905 gggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaaactttcccaggttcaatttcaatctaacaacttgcctaatcattcttatac 22526004  T
Q  124 acattctggcactcaaaa 141  Q
    | |||| | |||||||||    
T  22526005 atattcagacactcaaaa 22526022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 22963150 - 22963029
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||| |||||||||| || |||   | ||||||| |||||| || ||||||||||||||||||||    
T  22963150 gggtgctctcgggaacttgacatttttcacccaaaaatctcatttttaacatccccaggttcaatttcaatctaaagacttgcctaatcattcttataca 22963051  T
Q  125 cattctggcactcaaaaccatc 146  Q
      |||  |||| ||||||||||    
T  22963050 tgttcatgcacccaaaaccatc 22963029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 23668198 - 23668318
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||||| |||   | ||||||| || |||||| |||||||||||| |||||||    
T  23668198 gggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttc-ccaggttcaatttcaatccaaaaacttgcctaatcatttttataca 23668296  T
Q  125 cattctggcactcaaaaccatc 146  Q
      |||  |||||||||| ||||    
T  23668297 tgttcatgcactcaaaatcatc 23668318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 16799899 - 16800021
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaa--cttctccataatgaatttcattctaaaaacctgcctaatcattcttata 122  Q
    ||||||||||||||| || || |||||||| ||||||||| ||||||||  |||  ||||  | ||| ||| ||||||||||||||||||||||||||||    
T  16799899 gggtgctctcgggaatttgacatttttcacccaaaaatcc-atttttaaaactttcccatgttcaatctcaatctaaaaacctgcctaatcattcttata 16799997  T
Q  123 cacattctggcactcaaaaccatc 146  Q
    || |||| ||||||||||| ||||    
T  16799998 catattcaggcactcaaaaacatc 16800021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 17085886 - 17085770
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||| ||||| || |||||||| |||||||| ||||||||||||| ||||  | ||||| | |||||| || |||||||||||| |||||||    
T  17085886 gggtgctctcggaaacttgacatttttcacccaaaaatctcatttttaacttccccatgttcaattttaatctaaagacttgcctaatcattattataca 17085787  T
Q  125 cattctggcactcaaaa 141  Q
      ||| |||||||||||    
T  17085786 tgttcaggcactcaaaa 17085770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 40492563 - 40492441
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctcc-ataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||||||||||| || |||||||| |||||||| |||||||||  | ||| |   | ||| ||| ||||||||| |||||||||||||||||||    
T  40492563 gggtgctctcgggaacttgacatttttcacccaaaaatctcatttttaaactttccgaggttcaatctcaatctaaaaacttgcctaatcattcttatac 40492464  T
Q  124 acattctggcactcaaaaccatc 146  Q
    | |||| ||||||||||| ||||    
T  40492463 atattcaggcactcaaaatcatc 40492441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 14102935 - 14102820
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| ||||||||||||||||||||||  |||  | ||| ||| ||| ||||| ||||||||||||  ||||||    
T  14102935 gggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttcctcatgttcaatctcaatct-aaaacttgcctaatcattaatataca 14102837  T
Q  125 cattctggcactcaaaa 141  Q
     || | |||||||||||    
T  14102836 tatccaggcactcaaaa 14102820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 183
Target Start/End: Complemental strand, 19929340 - 19929185
Alignment:
Q  28 tgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacat 127  Q
    ||||||||||||||| || |||||||| |||||||||||||||||||||| | |     ||||||| ||||||||| | |||| ||||| ||||| |  |    
T  19929340 tgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttcccaacgtccaatttcaatctaaaaactttcctattcatttttataaatgt 19929241  T
Q  128 tctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatg 183  Q
    || |||||||||||||||| || |||| ||| |  | ||||| |||| ||||||||    
T  19929240 tcaggcactcaaaaccatctaatacttgacccaaaaggttaaatcacgaaatcatg 19929185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 22419126 - 22419009
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaat-ttcattctaaaaacctgcctaatcattcttatac 123  Q
    ||||||| ||||||| || || |||||||| |||||||||||||||||||||| ||||  | ||| |||| ||||||||| |  |||||||||||||||     
T  22419126 gggtgctttcgggaatttgacatttttcacccaaaaatcccatttttaacttccccatgttcaatcttcaatctaaaaacttaactaatcattcttataa 22419027  T
Q  124 acattctggcactcaaaa 141  Q
    | |||  |||||||||||    
T  22419026 atatttaggcactcaaaa 22419009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 182
Target Start/End: Complemental strand, 31723079 - 31722926
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacatt 128  Q
    ||||||||||| || || |||||||| |||||||||||||||||||||| | ||    || ||   || |||||| ||||||||||||  || ||| |||    
T  31723079 gctctcgggaaattgacatttttcactcaaaaatcccatttttaacttccctatgcccaaatttgatccaaaaacttgcctaatcatttctaaacatatt 31722980  T
Q  129 ctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcat 182  Q
      |||||||||||||||| || |||| ||| |  ||||||||||||||||||||    
T  31722979 aaggcactcaaaaccatctaaaacttgacccaaaacgttaattcacaaaatcat 31722926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 13661440 - 13661280
Alignment:
Q  23 cagggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttata 122  Q
    |||||||||||||||||||| || |||||||| ||||||||||||||| |||||| | |     ||||    || |||||| ||||||||||||||||||    
T  13661440 cagggtgctctcgggaacttgacatttttcacccaaaaatcccattttaaacttccctacgtccaattctgatccaaaaacttgcctaatcattcttata 13661341  T
Q  123 cacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatg 183  Q
    ||  ||  |||||||||||||||| |  |||  ||| |  | |||||||||||||||||||    
T  13661340 catgttaaggcactcaaaaccatctataactcgacccaaaaggttaattcacaaaatcatg 13661280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 13720083 - 13719923
Alignment:
Q  23 cagggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttata 122  Q
    |||||||||||||||||||| || |||||||| ||||||||||||||| |||||| | |     ||||    || |||||| ||||||||||||||||||    
T  13720083 cagggtgctctcgggaacttgacatttttcacccaaaaatcccattttaaacttccctacgtccaattctgatccaaaaacttgcctaatcattcttata 13719984  T
Q  123 cacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatg 183  Q
    ||  ||  |||||||||||||||| |  |||  ||| |  | |||||||||||||||||||    
T  13719983 catgttaaggcactcaaaaccatctataactcgacccaaaaggttaattcacaaaatcatg 13719923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 13507796 - 13507675
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||||  |||| |||||  |||   | | | ||| ||||||||| || ||||||||| |||||||    
T  13507796 gggtgctctcgggaacttgacatttttcactcaaaaatccatttttaaactttcccaggttcagtctcaatctaaaaacttgtctaatcattattataca 13507697  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| ||||||||||| ||||    
T  13507696 tattcaggcactcaaaatcatc 13507675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 13597328 - 13597207
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||||  |||| |||||  |||   | | | ||| ||||||||| || ||||||||| |||||||    
T  13597328 gggtgctctcgggaacttgacatttttcactcaaaaatccatttttaaactttcccaggttcagtctcaatctaaaaacttgtctaatcattattataca 13597229  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| ||||||||||| ||||    
T  13597228 tattcaggcactcaaaatcatc 13597207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 19154596 - 19154475
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || | |||||| ||||||||||||| |||||||| |  |  | ||| ||| ||||||||| | |||||||||| | |||||    
T  19154596 gggtgctctcgggaacttgacatatttcacccaaaaatcccattcttaacttccctgtgttcaatctcagtctaaaaacttccctaatcattataataca 19154497  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| || |||||||| ||||    
T  19154496 tattcaggaactcaaaatcatc 19154475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 22385448 - 22385375
Alignment:
Q  47 tttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattctta 120  Q
    ||||||||  ||||||||||||||||||||| | ||  | ||||||| ||||||||| ||||||||||||||||    
T  22385448 tttttcacctaaaaatcccatttttaacttccctatgttcaatttcaatctaaaaacttgcctaatcattctta 22385375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 17266703 - 17266582
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| |||||||||  |||| |||||    |   | ||| ||| ||||||||| |||||||||||| |||||||    
T  17266703 gggtgctctcgggaatttgacatttttcacccaaaaatccatttttaaactttcgtaggttcaatctcaatctaaaaacttgcctaatcattattataca 17266604  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| ||||||||||| ||||    
T  17266603 tattcaggcactcaaaaacatc 17266582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 28397963 - 28398079
Alignment:
Q  27 gtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacaca 126  Q
    |||||||||| || || || |||||||| |||||||| ||||||||||||  ||||  | ||||||| ||||||||   | ||||||||| ||||||| |    
T  28397963 gtgctctcggaaatttgacatttttcacccaaaaatctcatttttaactttcccatgttcaatttcaatctaaaaa---gtctaatcattattatacata 28398059  T
Q  127 ttctggcactcaaaaccatc 146  Q
    |||   ||||||||||||||    
T  28398060 ttccaacactcaaaaccatc 28398079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 20879179 - 20879227
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||||| || |||||||  ||||||||||||||||||||||    
T  20879179 gctctcgggaacttgacatttttcatccaaaaatcccatttttaacttc 20879227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 24353434 - 24353550
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || ||  ||||||| |||||||||  || | |||||  |||   | ||| ||| ||||||||| |||||||||||| |||||||    
T  24353434 gggtgctctcgggaatttgacaattttcacccaaaaatccatttataaactttcccaggttcaatctcaatctaaaaacttgcctaatcattattataca 24353533  T
Q  125 cattctggcactcaaaa 141  Q
     |||| |||||||||||    
T  24353534 tattcaggcactcaaaa 24353550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 36727522 - 36727470
Alignment:
Q  131 ggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatg 183  Q
    |||||||||||||||| || |||| |||||  |||||||||||||||||||||    
T  36727522 ggcactcaaaaccatctaaaacttgaccaaaaacgttaattcacaaaatcatg 36727470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 37116828 - 37116879
Alignment:
Q  95 tctaaaaacctgcctaatcattcttatacacattctggcactcaaaaccatc 146  Q
    ||||||||| |||||||||||| ||||||| |||| ||||||||||| ||||    
T  37116828 tctaaaaacttgcctaatcattattatacatattcaggcactcaaaatcatc 37116879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 17218171 - 17218221
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctc 79  Q
    ||||||||||  || || |||||||| ||||||||||||||||||||||||    
T  17218171 gctctcgggagtttgacatttttcactcaaaaatcccatttttaacttctc 17218221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 9622141 - 9621968
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaat 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||    
T  9622141 cgaataaaatcagggtgctctcgggaacttcacctttttcacacaaaaattccatctttaacttctccataacgaatttcattctaaaaacctgcctaat 9622042  T
Q  113 cattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatgatg 186  Q
    |||||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  9622041 cattcttatacacattctagcactcaaaaccatctaagacttgaccaacaacgttaattcacaaaatcatgatg 9621968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 23527837 - 23527716
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||||  | ||  | ||||||| ||||||||| ||||||||||||||||||||    
T  23527837 gggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaactttcctatgttcaatttcaatctaaaaacttgcctaatcattcttataca 23527738  T
Q  125 cattctggcactcaaaaccatc 146  Q
     || | ||||||||||||||||    
T  23527737 tatccaggcactcaaaaccatc 23527716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 25738853 - 25738947
Alignment:
Q  92 cattctaaaaacctgcctaatcattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatgatg 186  Q
    |||||||||||| ||||||||||||||||||| ||||| |||||||||||||||| ||||| | |||||  ||||||||||||||||||||||||    
T  25738853 cattctaaaaacttgcctaatcattcttatacgcattcaggcactcaaaaccatctaagacctgaccaaaaacgttaattcacaaaatcatgatg 25738947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 18204490 - 18204611
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||| ||||||| || |||||||| |||||||||||||||||||||| |  |  |  ||||||||  |||||| ||||||||||||||||||||    
T  18204490 gggtgctctcaggaacttgacatttttcacccaaaaatcccatttttaacttccctgtgttcgatttcatttcaaaaacttgcctaatcattcttataca 18204589  T
Q  125 cattctggcactcaaaaccatc 146  Q
    ||||| ||||||||||||||||    
T  18204590 cattcaggcactcaaaaccatc 18204611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 17229646 - 17229526
Alignment:
Q  26 ggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacac 125  Q
    |||||||| |||||||| || |||||||| |||||||||||||||||||||| | ||  | ||||||| ||||||||| ||||||||||||||||||||     
T  17229646 ggtgctcttgggaacttgacatttttcacccaaaaatcccatttttaacttccctatgttcaatttcaatctaaaaacttgcctaatcattcttatacat 17229547  T
Q  126 attctggcactcaaaaccatc 146  Q
     ||| ||||| ||||||||||    
T  17229546 gttcaggcacccaaaaccatc 17229526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 17106124 - 17106243
Alignment:
Q  27 gtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacaca 126  Q
    |||||||||||||||| || |||||||| |||||||||||||||||||||| |  |  | ||| ||| ||||||||| |||||||||||||||||||| |    
T  17106124 gtgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttccctgtgttcaatctcagtctaaaaacttgcctaatcattcttatacata 17106223  T
Q  127 ttctggcactcaaaaccatc 146  Q
    ||| ||||||||||| ||||    
T  17106224 ttcaggcactcaaaatcatc 17106243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 18177381 - 18177260
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||| ||||||| || |||||||| |||||||||||||||||||||| |  |  |  ||||||||  |||||| |||||||||||||||||| |    
T  18177381 gggtgctctcaggaacttgacatttttcacccaaaaatcccatttttaacttccctgtgttcgatttcatttcaaaaacttgcctaatcattcttatata 18177282  T
Q  125 cattctggcactcaaaaccatc 146  Q
    ||||| ||||||||||||||||    
T  18177281 cattcaggcactcaaaaccatc 18177260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 20224354 - 20224475
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||||  ||||  | ||| ||| ||||||||| ||||||||||||||||| ||    
T  20224354 gggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaactttcccatgttcaatctcaatctaaaaacttgcctaatcattcttatgca 20224453  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| ||||||||||| ||||    
T  20224454 tgttcaggcactcaaaatcatc 20224475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 22118338 - 22118459
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||||  ||||  | ||| ||| ||||||||| ||||||||||||||||| ||    
T  22118338 gggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaactttcccatgttcaatctcaatctaaaaacttgcctaatcattcttatgca 22118437  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| ||||||||||| ||||    
T  22118438 tgttcaggcactcaaaatcatc 22118459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 18453593 - 18453713
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||| |||||||||| || |||||||| |||||||| ||||||||||||| ||||  | ||||||| ||||||||| |||||||||||||||||| |    
T  18453593 gggtgctatcgggaacttgacatttttcacccaaaaatctcatttttaacttccccatgttcaatttcaatctaaaaacttgcctaatcattcttatata 18453692  T
Q  125 cattctggcactcaaaaccat 145  Q
      ||  |||||||||||||||    
T  18453693 tgttaaggcactcaaaaccat 18453713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 18199146 - 18199024
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaa-tcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||| ||||||| |  |||||||| |||||| |||||||||||||||| |  |  | |||||||||| |||||| | |||||||||||||||||    
T  18199146 gggtgctctcaggaacttgatatttttcacccaaaaaatcccatttttaacttccctgtgttcaatttcattccaaaaacattcctaatcattcttatac 18199047  T
Q  124 acattctggcactcaaaaccatc 146  Q
    |||||| ||||||||||||||||    
T  18199046 acattcaggcactcaaaaccatc 18199024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 20137061 - 20137158
Alignment:
Q  27 gtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||| ||||||| || |||||||| ||||||||||||||||||||| ||  |  | ||||||| ||||||||| ||||||||||||||||||||    
T  20137061 gtgctctctggaacttgacatttttcacccaaaaatcccatttttaacttatctctgttcaatttcaatctaaaaacttgcctaatcattcttataca 20137158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 22195808 - 22195711
Alignment:
Q  27 gtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||| ||||||| || |||||||| ||||||||||||||||||||| ||  |  | ||||||| ||||||||| ||||||||||||||||||||    
T  22195808 gtgctctctggaacttgacatttttcacccaaaaatcccatttttaacttatctctgttcaatttcaatctaaaaacttgcctaatcattcttataca 22195711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 18696897 - 18697013
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || ||||| ||  |||||||||||||||||||||  |||  |  || ||| ||||||||| |||||||||||| |||||||    
T  18696897 gggtgctctcgggaacttgacatttttaaccaaaaaatcccatttttaacttcctcatgttccatctcaatctaaaaacttgcctaatcattattataca 18696996  T
Q  125 cattctggcactcaaaa 141  Q
     |||| |||||||||||    
T  18696997 tattcaggcactcaaaa 18697013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 16245737 - 16245858
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttt-taacttctccataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||||||||||| || |||||||| ||||||||||||||| | ||||||| ||    ||||  | ||||||||| ||||||||||||||||||     
T  16245737 gggtgctctcgggaacttgacatttttcactcaaaaatcccattttctgacttctctatgtctaattcaaatctaaaaacttgcctaatcattcttatat 16245836  T
Q  124 acattctggcactcaaaaccat 145  Q
    | |||  |||||||||||||||    
T  16245837 atattaaggcactcaaaaccat 16245858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 146
Target Start/End: Original strand, 23539350 - 23539449
Alignment:
Q  47 tttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacattctggcactcaaaaccatc 146  Q
    |||||||| ||||||||| |||||||||||| |  |  | ||| ||| ||||||||| ||||||| |||||||||||| |||| ||||||||||||||||    
T  23539350 tttttcacccaaaaatcctatttttaacttccctgtgttcaatctcagtctaaaaacttgcctaaccattcttatacatattcaggcactcaaaaccatc 23539449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 35008560 - 35008681
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||| ||||||| || |||||||| |||||||||||||||||||||     |  | ||| ||| ||||||||| ||||||||||||||||||||    
T  35008560 gggtgctctcaggaacttgacatttttcactcaaaaatcccatttttaactttcatgtgttcaatctcagtctaaaaacttgcctaatcattcttataca 35008659  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| |||||| |||| ||||    
T  35008660 tgttcaggcacttaaaaacatc 35008681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 18706673 - 18706764
Alignment:
Q  50 ttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacattctggcactcaaaa 141  Q
    ||||| |||||||||||||||||||||| ||||  |  || ||| ||||||||| |||||||||||| ||||||| |||| | |||||||||    
T  18706673 ttcacccaaaaatcccatttttaacttccccatgttccatctcaatctaaaaacttgcctaatcattattatacatattcagacactcaaaa 18706764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 18896047 - 18895925
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataat-gaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    ||||||||||||||| || || |||||||| |||||||||||||| ||||||  ||||  |  ||||||| ||||||||| || ||||||||| | ||||    
T  18896047 gggtgctctcgggaatttgacatttttcacccaaaaatcccatttataactttcccatgttcaaatttcaatctaaaaacttgtctaatcattataatac 18895948  T
Q  124 acattctggcactcaaaaccatc 146  Q
    | ||||  |||||||||| ||||    
T  18895947 atattccagcactcaaaaacatc 18895925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 183
Target Start/End: Complemental strand, 31732468 - 31732314
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacatt 128  Q
    ||||||||||  || || |||||||| |||||||||||||||||||||||| ||    || || | ||||||||| ||||||||||||  || |||  ||    
T  31732468 gctctcgggagtttgacatttttcactcaaaaatcccatttttaacttctctatgcctaaatttaatctaaaaacttgcctaatcatttctaaacatgtt 31732369  T
Q  129 ctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatg 183  Q
      |||||||||||||||| || |||  ||| |  | |||||||||||||||||||    
T  31732368 aaggcactcaaaaccatctaaaactcgaccgaaaatgttaattcacaaaatcatg 31732314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 19023781 - 19023893
Alignment:
Q  23 cagggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttata 122  Q
    |||||||||||||||||||| || |||||||| |||||||||  |||| |||||   ||   | ||| ||| ||||||||| |||||||||||| |||||    
T  19023781 cagggtgctctcgggaacttgacatttttcactcaaaaatccatttttaaactttctcaggttcaatctcaatctaaaaacttgcctaatcattattata 19023880  T
Q  123 cacattctggcac 135  Q
    || |||| |||||    
T  19023881 catattcaggcac 19023893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 23077145 - 23077241
Alignment:
Q  28 tgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||| ||||| || | |||||| ||||||| |||||||||||||| | ||  | ||| ||| ||||||||| ||| ||||||||||||||||    
T  23077145 tgctctcggaaacttgacatatttcactcaaaaattccatttttaacttccctatgttcaatctcagtctaaaaacttgcataatcattcttataca 23077241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 10445733 - 10445781
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||||| || ||||||||  |||||||||||||||||||||    
T  10445733 gctctcgggaacttgacatttttcacctaaaaatcccatttttaacttc 10445781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 23501258 - 23501343
Alignment:
Q  98 aaaaacctgcctaatcattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatg 183  Q
    |||||| ||||||||||||| ||||||  ||  |||||||||||||||  || |||| ||| |  ||||||||||| |||||||||    
T  23501258 aaaaacttgcctaatcattcctatacatgttaaggcactcaaaaccatataaaacttgacccaaaacgttaattcataaaatcatg 23501343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 138; Significance: 2e-72; HSPs: 3)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 11913 - 11740
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaat 112  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11913 cgaataaaatcagggtgctctcgggaacttcacatttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacatgcctaat 11814  T
Q  113 cattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatgatg 186  Q
    |||||||||||||||||  ||||||||||||||| ||||||| |||||| |||||||||| |||||||||||||    
T  11813 cattcttatacacattccagcactcaaaaccatctaagacttgaccaacaacgttaattcgcaaaatcatgatg 11740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 15065 - 14892
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaat 112  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15065 cgaataaaatcagggtgctctcgggaacttcacatttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacatgcctaat 14966  T
Q  113 cattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatgatg 186  Q
    |||||||||||||||||  ||||||||||||||| ||||||| |||||| |||||||||| |||||||||||||    
T  14965 cattcttatacacattccagcactcaaaaccatctaagacttgaccaacaacgttaattcgcaaaatcatgatg 14892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301; HSP #3
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 16313 - 16140
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaat 112  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16313 cgaataaaatcagggtgctctcgggaacttcacatttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacatgcctaat 16214  T
Q  113 cattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatgatg 186  Q
    |||||||||||||||||  ||||||||||||||| ||||||| |||||| |||||||||| |||||||||||||    
T  16213 cattcttatacacattccagcactcaaaaccatctaagacttgaccaacaacgttaattcgcaaaatcatgatg 16140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 172658 - 172485
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaat 112  Q
    ||||||| ||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  172658 cgaataaaatcagggtgctctcgagaacttcacctttttcactcaaaaatctcatttttaacttctccataatgaatttcattctaaaaacctgcctaat 172559  T
Q  113 cattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatgatg 186  Q
    ||||||||||||||||| |||||| ||||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  172558 cattcttatacacattccggcacttaaaaccatctaagacttgaccaacaacgttaattcacaaaatcatgatg 172485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 119338 - 119217
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||| ||||||||| || |||||||| |||||||||||||||||| ||| ||||  | ||| ||| ||||||||| || ||||||||| |||||||    
T  119338 gggtgctcccgggaacttgacatttttcacccaaaaatcccatttttaaattccccatgttcaatctcaatctaaaaacttgtctaatcattattataca 119239  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| ||||||||||| ||||    
T  119238 tattcaggcactcaaaatcatc 119217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 209322 - 209494
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaat 112  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  209322 cgaataaaatcagggtgctctcgggaacttcaactttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaa-ctgcctaat 209420  T
Q  113 cattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatgatg 186  Q
    ||||||||||||||||| |||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||    
T  209421 cattcttatacacattccggcactcaaaaccatctaggacttgaccaacaacgttaattcacaaaatcatgatg 209494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 124; Significance: 5e-64; HSPs: 2)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 24608 - 24779
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttt-tcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaa 111  Q
    ||||||| |||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24608 cgaataaaatcatggtgctctcgagaacttcaccttttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgtctaa 24707  T
Q  112 tcattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatg 183  Q
    ||||||| |||  |||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||    
T  24708 tcattctcatatgcattctggcactcaaaaccatctaagacttgaccaacaacgttaattcacaaaatcatg 24779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 35478 - 35649
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttt-tcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaa 111  Q
    ||||||| |||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35478 cgaataaaatcatggtgctctcgagaacttcaccttttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgtctaa 35577  T
Q  112 tcattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatg 183  Q
    ||||||| |||  |||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||    
T  35578 tcattctcatatgcattctggcactcaaaaccatctaagacttgaccaacaacgttaattcacaaaatcatg 35649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 13892982 - 13893143
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||| || |||| ||||||||| ||||||| |||||||||||| |||||||    
T  13892982 gggtgctctcgggaacttgacatttttcacacaaaaatcccatttttaacttccccgtaataaatttcattttaaaaacttgcctaatcattgttataca 13893081  T
Q  125 cattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatgatg 186  Q
    ||||| ||||||| |||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  13893082 cattccggcactcgaaaccatctaagacttgaccaacaacgttaattcacaaaatcatgatg 13893143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 9725391 - 9725234
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaa-tttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||||||||||| || ||||||||  |||||||||||||||||||||||||   | || ||||| ||||||||| ||||||||||||||||||     
T  9725391 gggtgctctcgggaacttgacatttttcacttaaaaatcccatttttaacttctccaagttcaattttcaatctaaaaacttgcctaatcattcttataa 9725292  T
Q  124 acattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatca 181  Q
    | |||  |||||||||||||||| || |||| |||    || ||||||||||||||||    
T  9725291 atattaaggcactcaaaaccatctaaaacttaacctctaacattaattcacaaaatca 9725234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 11768650 - 11768529
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || ||||||||  ||||||||||||||||||||| |||   | ||||||| ||||||||| ||||||||||||||||||||    
T  11768650 gggtgctctcgggaacttgacttttttcacctaaaaatcccatttttaacttccccaagttcaatttcaatctaaaaacttgcctaatcattcttataca 11768551  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| ||||||||||| ||||    
T  11768550 tgttcaggcactcaaaatcatc 11768529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 130525 - 130404
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || ||||||||||| |||||||||||||||||||||| | ||  | ||||||| |||| |||| | ||||||||||||||||||    
T  130525 gggtgctctcgggaatttgacctttttcacccaaaaatcccatttttaacttccctatgttcaatttcaatctagaaacttacctaatcattcttataca 130426  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| ||||| ||||||||||    
T  130425 tgttcaggcacccaaaaccatc 130404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 16996610 - 16996731
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| ||||||| |||||||||||||| | ||  | ||||||| ||||| ||| ||||||||||||||||||||    
T  16996610 gggtgctctcgggaacttgacatttttcacccaaaaattccatttttaacttccctatgttcaatttcaatctaagaacttgcctaatcattcttataca 16996709  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| ||||| ||||||||||    
T  16996710 tgttcaggcacccaaaaccatc 16996731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 42462339 - 42462455
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||| |||||| || |||||||| |||||||||||||||||||||| | ||  | ||||||| ||||||||| ||||||||||||||||||||    
T  42462339 gggtgctctcgagaacttgacatttttcacccaaaaatcccatttttaacttcccaatgttcaatttcaatctaaaaacttgcctaatcattcttataca 42462438  T
Q  125 cattctggcactcaaaa 141  Q
      ||| ||||| |||||    
T  42462439 tgttcaggcacccaaaa 42462455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 9033055 - 9032934
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| |||||||||||||||||||||| |||   | ||||||| ||||||||| || ||| | ||| |||||||    
T  9033055 gggtgctctcgggaatttgacatttttcacccaaaaatcccatttttaacttccccacgttcaatttcaatctaaaaacttgtctagttattattataca 9032956  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| ||||||||||| ||||    
T  9032955 tattcaggcactcaaaatcatc 9032934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 9177376 - 9177255
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| |||||||||||||||||||||| |     | ||| ||| ||||||||| | ||||||||||||||||||    
T  9177376 gggtgctctcgggaatttaacatttttcactcaaaaatcccatttttaacttccctgcgttcaatctcaatctaaaaacttacctaatcattcttataca 9177277  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| ||||||||||| ||||    
T  9177276 tgttcaggcactcaaaaacatc 9177255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 16092126 - 16092248
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctc-cataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||| ||||||||||||| || |||||||| ||||||||||||||||||  | || |    | ||| ||| ||||||||||| |||||||||||||||||    
T  16092126 gggtactctcgggaacttgacatttttcacccaaaaatcccatttttaaactttctcgcgttcaatctcaatctaaaaacctacctaatcattcttatac 16092225  T
Q  124 acattctggcactcaaaaccatc 146  Q
    | |||| ||||||||||| ||||    
T  16092226 atattcaggcactcaaaatcatc 16092248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 146
Target Start/End: Original strand, 14045159 - 14045279
Alignment:
Q  26 ggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacac 125  Q
    |||||||||||||| || || |||||||| |||||||||  |||| |||||  |||   | ||| ||| ||||||||| |||||||||||| |||||||     
T  14045159 ggtgctctcgggaatttgacatttttcacccaaaaatccatttttaaactttcccaggttcaatctcaatctaaaaacttgcctaatcattattatacat 14045258  T
Q  126 attctggcactcaaaaccatc 146  Q
    |||| ||||||||||| ||||    
T  14045259 attcaggcactcaaaaacatc 14045279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 146
Target Start/End: Original strand, 14355189 - 14355309
Alignment:
Q  26 ggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacac 125  Q
    |||||||||||||| || || |||||||| |||||||||  |||| |||||  |||   | ||| ||| ||||||||| |||||||||||| |||||||     
T  14355189 ggtgctctcgggaatttgacatttttcacccaaaaatccatttttaaactttcccaggttcaatctcaatctaaaaacttgcctaatcattattatacat 14355288  T
Q  126 attctggcactcaaaaccatc 146  Q
    |||| ||||||||||| ||||    
T  14355289 attcaggcactcaaaaacatc 14355309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 1867772 - 1867652
Alignment:
Q  26 ggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacac 125  Q
    |||||||||||||| || || |||||||  |||||||||  |||| |||||  |||   | ||| ||| ||||||||| |||||||||||| |||||||     
T  1867772 ggtgctctcgggaatttgacatttttcatccaaaaatccatttttaaactttcccaggttcaatctcaatctaaaaacttgcctaatcattattatacat 1867673  T
Q  126 attctggcactcaaaaccatc 146  Q
    |||| |||||| |||| ||||    
T  1867672 attcaggcactaaaaaacatc 1867652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 12901740 - 12901852
Alignment:
Q  26 ggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacac 125  Q
    |||||||||||||| || || |||||||| |||||||||  |||| |||||  |||   | ||| ||| ||||||||| |||||||||||| |||||||     
T  12901740 ggtgctctcgggaatttgacatttttcacccaaaaatccatttttaaactttcccaggttcaatctcaatctaaaaacttgcctaatcattattatacat 12901839  T
Q  126 attctggcactca 138  Q
     ||| ||||||||    
T  12901840 gttcaggcactca 12901852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 36301175 - 36301127
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||||| || |||||||| |||||||| |||||||||||||    
T  36301175 gctctcgggaacttgacatttttcacccaaaaatctcatttttaacttc 36301127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 2529694 - 2529643
Alignment:
Q  95 tctaaaaacctgcctaatcattcttatacacattctggcactcaaaaccatc 146  Q
    ||||||||| |||||||||||| ||||||| |||| ||||||||||| ||||    
T  2529694 tctaaaaacttgcctaatcattattatacatattcaggcactcaaaatcatc 2529643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 15202670 - 15202715
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttt 70  Q
    |||||||||||||||||| || |||||||| | |||||||||||||    
T  15202670 gggtgctctcgggaacttgacatttttcaccccaaaatcccatttt 15202715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 14219483 - 14219435
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    ||||||||||  || || |||||||| ||||||||||||||||||||||    
T  14219483 gctctcgggagtttgacatttttcactcaaaaatcccatttttaacttc 14219435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 15096155 - 15096107
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    ||||||||||  || || |||||||| ||||||||||||||||||||||    
T  15096155 gctctcgggagtttgacatttttcactcaaaaatcccatttttaacttc 15096107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 162822 - 162649
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaat 112  Q
    ||||||| |||||| ||||||||||||||| || ||| |||||||||||||||| ||||| |||  || |||||||||||||||||||||| | | | ||    
T  162822 cgaataaaatcaggatgctctcgggaacttgacatttctcacacaaaaatcccaattttatctttcccgtaatgaatttcattctaaaaacttccttgat 162723  T
Q  113 cattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatgatg 186  Q
    ||||||||||||||||||||||||||||||| || ||||||| |||||| |||||| |||||||||||||||||    
T  162722 cattcttatacacattctggcactcaaaaccctctaagacttgaccaacaacgttatttcacaaaatcatgatg 162649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 497814 - 497935
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||||| ||||  | ||||||| |||||| || |||||||||||| |||||||    
T  497814 gggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttccccatgttcaatttcaatctaaagacttgcctaatcattattataca 497913  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| ||||| ||||| ||||    
T  497914 tgttcaggcacacaaaatcatc 497935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 446883 - 447004
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||| ||||| || |||||||| |||||||||||||||||||||| ||||  | ||||||| |||||| || |||||||||||| |||||||    
T  446883 gggtgctctcggaaacttgacatttttcacccaaaaatcccatttttaacttccccatgttcaatttcaatctaaagacttgcctaatcattattataca 446982  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| ||||| ||||| ||||    
T  446983 tgttcaggcacccaaaatcatc 447004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 18546675 - 18546554
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||||| ||||  | ||||||| ||||||||| ||||||||||||||||||||    
T  18546675 gggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttccccatgttcaatttcaatctaaaaacttgcctaatcattcttataca 18546576  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| ||||||||||| ||||    
T  18546575 tattcaggcactcaaaatcatc 18546554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 34137331 - 34137488
Alignment:
Q  26 ggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacac 125  Q
    ||||||||||||||||| || |||||||| |||||||||||||||||||||| ||||  | ||||||| || |||||| ||||||||||||||||||||     
T  34137331 ggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttccccatgttcaatttcaatccaaaaacttgcctaatcattcttatacat 34137430  T
Q  126 attctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatg 183  Q
     ||| |||||||||||||||| || |||  ||| |  | ||||| |||||||||||||    
T  34137431 gttcaggcactcaaaaccatctaaaactcgacccaaaaggttaaatcacaaaatcatg 34137488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 23287752 - 23287857
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttc-attctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||||| ||| | | |||||| ||||||||||| |||||||||||| ||||||    
T  23287752 gggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttc-ccagattcaatttcaattctaaaaacttgcctaatcattattatac 23287850  T
Q  124 acattct 130  Q
    | |||||    
T  23287851 atattct 23287857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 21243062 - 21243182
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||||||||||| | ||| ||||  | ||||||| ||| ||||| ||||||||||||||||||||    
T  21243062 gggtgctctcgggaacttgacatttttcacccaaaaatcccatttttcatttccccatgttcaatttcaatct-aaaacttgcctaatcattcttataca 21243160  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||  ||||| ||||||||||    
T  21243161 tgttaaggcacccaaaaccatc 21243182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 39827727 - 39827605
Alignment:
Q  25 gggtgctctcgggaacttc-acctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    ||||||||||||||| ||  || |||||||| |||||||||||||||||||||  ||||  | || |||| ||||||||| | |||||||||| ||||||    
T  39827727 gggtgctctcgggaattttgacatttttcacccaaaaatcccatttttaactttcccatgttcaacttcaatctaaaaactttcctaatcattattatac 39827628  T
Q  124 acattctggcactcaaaaccatc 146  Q
    | |||| ||||||||||| ||||    
T  39827627 atattcaggcactcaaaatcatc 39827605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 43947080 - 43946959
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| ||||||| |||||||||||||  ||||  | ||||||| ||||||||| || ||||||||| |||||||    
T  43947080 gggtgctctcgggaatttgacatttttcacccaaaaattccatttttaactttcccatgttcaatttcaatctaaaaacttgtctaatcattattataca 43946981  T
Q  125 cattctggcactcaaaaccatc 146  Q
     ||||  ||||| |||| ||||    
T  43946980 tattccagcactaaaaatcatc 43946959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 20519903 - 20519790
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| |||||||||  ||||||||||  ||||  | ||| ||| ||||||||| |||||||||||| |||||||    
T  20519903 gggtgctctcgggaatttgacatttttcacccaaaaatccattttttaactttcccatgttcaatctcaatctaaaaacttgcctaatcattattataca 20519804  T
Q  125 cattctggcactca 138  Q
      ||| ||||||||    
T  20519803 tgttcaggcactca 20519790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 23005138 - 23005260
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccat-ttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||||||||||| || ||||||||  ||||||||||| ||| |||||  |||   | ||| ||| || |||||| |||||||||||||||||||    
T  23005138 gggtgctctcgggaacttgacatttttcactaaaaaatcccatgtttaaactttcccaagttcaatctcaatcaaaaaacttgcctaatcattcttatac 23005237  T
Q  124 acattctggcactcaaaaccatc 146  Q
    |  ||| ||||||||||| ||||    
T  23005238 atgttcaggcactcaaaaacatc 23005260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 23799842 - 23799890
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||| ||||||| || |||||||| ||||||||||||||||||||||    
T  23799842 gctctcaggaacttgacatttttcacccaaaaatcccatttttaacttc 23799890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 26392792 - 26392844
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||||||||| || |||||||| |  |||||||||||||||||||    
T  26392792 gggtgctctcgggaacttgacatttttcactcccaaatcccatttttaacttc 26392844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 19672236 - 19672357
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccattt-ttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||||||||||| || |||||||| ||||||||| |||| | |||||| |||   | ||  ||| ||||||||| |||||||||||| ||||||    
T  19672236 gggtgctctcgggaacttgacatttttcacccaaaaatcctatttctaaacttc-ccaggttcaagctcaatctaaaaacttgcctaatcattattatac 19672334  T
Q  124 acattctggcactcaaaaccatc 146  Q
    | ||||   ||||||||| ||||    
T  19672335 atattcaaacactcaaaatcatc 19672357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 22412846 - 22412733
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| |||||||||  |||| |||||  |||   | ||| ||| ||||||||| |||||||||||| | |||||    
T  22412846 gggtgctctcgggaatttgacatttttcacccaaaaatccatttttaaactttcccaggttcaatctcaatctaaaaacttgcctaatcattatcataca 22412747  T
Q  125 cattctggcactca 138  Q
      ||| ||||||||    
T  22412746 tgttcaggcactca 22412733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 19646744 - 19646792
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||||  || |||||||| ||||||||||| ||||||||||    
T  19646744 gctctcgggaactcaacatttttcacccaaaaatcccaattttaacttc 19646792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 26 - 146
Target Start/End: Original strand, 15796832 - 15796952
Alignment:
Q  26 ggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacac 125  Q
    ||||||||||||||||| || |||||||| |||||||||||||||||||||| |  |  | ||| ||| ||||||||| ||||||||||||||||||||     
T  15796832 ggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttccctgtgttcaatctcagtctaaaaacttgcctaatcattcttatacat 15796931  T
Q  126 attctggcactcaaaaccatc 146  Q
    |||||||||||||||||||||    
T  15796932 attctggcactcaaaaccatc 15796952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 20572277 - 20572398
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| |||||||||||||||||||||  ||||  | ||||||| ||||||||| ||||||||||||||||||||    
T  20572277 gggtgctctcgggaatttgacatttttcacccaaaaatcccatttttaacttacccatgttcaatttcaatctaaaaacttgcctaatcattcttataca 20572376  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| | ||||||||| ||||    
T  20572377 tattcagacactcaaaatcatc 20572398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 25574180 - 25574059
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||| ||||| ||| ||| ||||  | ||||||| ||||||||| || |||||||||||||||||    
T  25574180 gggtgctctcgggaacttgacatttttcacccaaaaatctcatttataatttccccatgttcaatttcaatctaaaaacttgtctaatcattcttataca 25574081  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| ||||||||||||||||    
T  25574080 tgttcaggcactcaaaaccatc 25574059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 25575373 - 25575252
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||| ||||| ||| ||| ||||  | ||||||| ||||||||| || |||||||||||||||||    
T  25575373 gggtgctctcgggaacttgacatttttcacccaaaaatctcatttataatttccccatgttcaatttcaatctaaaaacttgtctaatcattcttataca 25575274  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| ||||||||||||||||    
T  25575273 tgttcaggcactcaaaaccatc 25575252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 25576566 - 25576445
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||| ||||| ||| ||| ||||  | ||||||| ||||||||| || |||||||||||||||||    
T  25576566 gggtgctctcgggaacttgacatttttcacccaaaaatctcatttataatttccccatgttcaatttcaatctaaaaacttgtctaatcattcttataca 25576467  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| ||||||||||||||||    
T  25576466 tgttcaggcactcaaaaccatc 25576445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 25744132 - 25744253
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||||| |  |  | ||| ||| ||||||||  | ||||||||||||||||||    
T  25744132 gggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttccctgtgttcaatctcagtctaaaaatttacctaatcattcttataca 25744231  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| ||||||||||||||||    
T  25744232 tattcaggcactcaaaaccatc 25744253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 26740358 - 26740237
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccata-atgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||||||||||| || |||||||| | |||||||||||||||||||| ||| |  | ||||||| ||||||||| |||||||||||||||||||    
T  26740358 gggtgctctcgggaacttgacatttttcactccaaaatcccatttttaacttc-ccagagttcaatttcaatctaaaaacttgcctaatcattcttatac 26740260  T
Q  124 acattctggcactcaaaaccatc 146  Q
    |  ||| ||||||||||| ||||    
T  26740259 atgttcaggcactcaaaatcatc 26740237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 27988639 - 27988518
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||| || ||||| || | |||||||||||| || ||||||||||||| |   ||||||||||||||||||||| ||||||||||||||||||      
T  27988639 gggtgctcttggaaacttgacatctttcacacaaaattctcatttttaacttccctgcaatgaatttcattctaaaaacttgcctaatcattcttataag 27988540  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| |||||| |||||||||    
T  27988539 tattcaggcacttaaaaccatc 27988518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 26732545 - 26732424
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||| ||||||| || || || |||||||| | |||||||||||||||||||| | |   | ||||||| ||||||||| ||||||||||||||||||||    
T  26732545 gggtactctcggaaagttgacatttttcactccaaaatcccatttttaacttcccaaagttcaatttcaatctaaaaacttgcctaatcattcttataca 26732446  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| ||||||||||| ||||    
T  26732445 tgttcaggcactcaaaatcatc 26732424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 23475884 - 23475992
Alignment:
Q  38 aacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattct-aaaaacctgcctaatcattcttatacacattctggcact 136  Q
    ||||| || |||||||| |||||||||||||||||||||| | ||  | ||||||| ||| |||||| ||||||||||||||||||||  ||| |||||     
T  23475884 aacttgacatttttcacccaaaaatcccatttttaacttccctatgttcaatttcaatctaaaaaacttgcctaatcattcttatacatgttcaggcacc 23475983  T
Q  137 caaaaccat 145  Q
    |||||||||    
T  23475984 caaaaccat 23475992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 23470191 - 23470313
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattct-aaaaacctgcctaatcattcttatac 123  Q
    |||||||||| ||||||| || ||||||||  ||||||| ||||||||||||| | ||  | ||||||||||| |||||| ||||| |||||||||||||    
T  23470191 gggtgctctccggaacttgacatttttcacctaaaaatctcatttttaacttccctatgttcaatttcattctaaaaaacttgcctcatcattcttatac 23470290  T
Q  124 acattctggcactcaaaaccatc 146  Q
    |  ||| || || ||||||||||    
T  23470291 atgttcaggaacccaaaaccatc 23470313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 20026651 - 20026529
Alignment:
Q  24 agggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||||||||  || || |||||||| |||||||||  |||| |||||  ||||  | ||| ||| ||||||||| |||||||||||| ||||||    
T  20026651 agggtgctctcgggagtttgacatttttcactcaaaaatccatttttaaactttcccatgttcaatctcaatctaaaaacttgcctaatcattattatac 20026552  T
Q  124 acattctggcactcaaaaccatc 146  Q
    |  ||| ||||||||||| ||||    
T  20026551 atgttcaggcactcaaaatcatc 20026529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 22177930 - 22177809
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| |||||||||  |||| |||||   ||   | ||  ||| ||||||||| |||||||||||| |||||||    
T  22177930 gggtgctctcgggaatttgacatttttcacccaaaaatccatttttaaactttctcaggttcaaactcaatctaaaaacttgcctaatcattattataca 22177831  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| ||||||||||| ||||    
T  22177830 tattcaggcactcaaaatcatc 22177809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 10953556 - 10953712
Alignment:
Q  28 tgctctcgggaacttcacctttttcacacaaaaatcccattttta-acttctccataatgaatttcattctaaaaacctgcctaatcattcttatacaca 126  Q
    |||||||||||  || || |||||||| ||||||||||||||||  ||||||| ||    || || | |||||||| |||||||||||||| || |||      
T  10953556 tgctctcgggagtttgacatttttcactcaaaaatcccattttttgacttctctatgtccaaattaaatctaaaaatctgcctaatcattcctaaacagg 10953655  T
Q  127 ttctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatg 183  Q
    ||  |||||||||||||||| || |||| |||    || ||||||||||||||||||    
T  10953656 ttaaggcactcaaaaccatctaaaacttgacctttaacattaattcacaaaatcatg 10953712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 21503654 - 21503701
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaactt 76  Q
    |||||||||||||| || |||||||| | |||||||||||||||||||    
T  21503654 gctctcgggaacttgacatttttcaccccaaaatcccatttttaactt 21503701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 20469594 - 20469546
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    ||||||||||  || || |||||||| ||||||||||||||||||||||    
T  20469594 gctctcgggagtttgacatttttcactcaaaaatcccatttttaacttc 20469546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 21533606 - 21533484
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttc-attctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||||| |||   | |||||| ||||||||||| |||||||||||||||||||    
T  21533606 gggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttccccaggttcaatttcaattctaaaaacttgcctaatcattcttatac 21533507  T
Q  124 acattctggcactcaaaaccatc 146  Q
    | |||| ||||||||||| ||||    
T  21533506 atattcaggcactcaaaatcatc 21533484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 48520978 - 48521099
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||||| ||||  | ||| ||| ||||||||| |||||||||||| |||||||    
T  48520978 gggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttccccatgttcaatctcaatctaaaaacttgcctaatcattattataca 48521077  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| || |||||||| ||||    
T  48521078 tattcaggtactcaaaaacatc 48521099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 21043060 - 21042940
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| ||||||| |||||||||||||| | ||  | ||||||| ||||||||| ||||||||||||||||||||    
T  21043060 gggtgctctcgggaacttgacatttttcacccaaaaattccatttttaacttccctatgttcaatttcaatctaaaaacttgcctaatcattcttataca 21042961  T
Q  125 cattctggcactcaaaaccat 145  Q
      ||| ||||| |||||||||    
T  21042960 tgttcaggcacccaaaaccat 21042940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 22124696 - 22124795
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||  |||||||| || |||||||| |||||||||||||||||||||| | ||  | ||||||| ||||||||| ||||||||||||||||||||    
T  22124696 gggtgctcctgggaacttgacatttttcacccaaaaatcccatttttaacttccctatgttcaatttcaatctaaaaacttgcctaatcattcttataca 22124795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 16381574 - 16381695
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||| |||||||||| || || |||||||| |||||||||||||||||| ||| |  |  | ||||||||||||||||| | ||||||||||||||||||    
T  16381574 gggtactctcgggaagttgacatttttcacccaaaaatcccatttttaatttccctgtgttcaatttcattctaaaaactttcctaatcattcttataca 16381673  T
Q  125 cattctggcactcaaaaccatc 146  Q
      | | ||||||||||||||||    
T  16381674 tgtccaggcactcaaaaccatc 16381695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 52940588 - 52940467
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||| ||||||||||||| || |  | ||||||| |||||| || |||||||| ||| |||||||    
T  52940588 gggtgctctcgggaacttgacatttttcacccaaaaatctcatttttaacttccccgtgttcaatttcaatctaaagacttgcctaattattattataca 52940489  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| ||||||||||| ||||    
T  52940488 tgttcaggcactcaaaatcatc 52940467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 21683407 - 21683529
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaa-cttctccataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||||| ||||| || |||||||| |||||||||||||||||| ||| | ||     ||||||| ||||||||| |||||| ||||||||||||    
T  21683407 gggtgctctcggaaacttgacatttttcacccaaaaatcccatttttaaactttttcaagtacaatttcaatctaaaaacttgcctagtcattcttatac 21683506  T
Q  124 acattctggcactcaaaaccatc 146  Q
    | |||| ||||||||||| ||||    
T  21683507 atattcaggcactcaaaatcatc 21683529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 27652931 - 27652811
Alignment:
Q  26 ggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacac 125  Q
    ||||||||||| ||||| || |||||||| |||||||| |||||||||||||  ||   | ||| ||| ||||||||| |||||||||||| |||| ||     
T  27652931 ggtgctctcggtaacttgacatttttcacccaaaaatctcatttttaacttcctcacgttcaatctcaatctaaaaacttgcctaatcattattatgcat 27652832  T
Q  126 attctggcactcaaaaccatc 146  Q
    |||| ||||||||||| ||||    
T  27652831 attcaggcactcaaaaacatc 27652811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 16367997 - 16367876
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| |||||||||   ||| ||||| ||||   | | | ||| ||||||||| |||||||||||| |||||||    
T  16367997 gggtgctctcgggaatttgacatttttcacccaaaaatccatctttaaacttttccaggttcattctcaatctaaaaacttgcctaatcattattataca 16367898  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| ||||||||||| ||||    
T  16367897 tattcaggcactcaaaatcatc 16367876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 20346214 - 20346305
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcatt 116  Q
    |||||||||||||||||| || |||||||| |||||||||  |||| |||||  |||  || ||| ||| ||||||||| ||||||||||||    
T  20346214 gggtgctctcgggaacttgacttttttcactcaaaaatccatttttaaactttcccaggatcaatctcaatctaaaaacttgcctaatcatt 20346305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 16093580 - 16093482
Alignment:
Q  48 ttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacattctggcactcaaaaccatc 146  Q
    ||||||| |||||||||  |||||||||| ||||   | ||| ||| ||||||||| |||| ||||||| ||||||| || | ||||||||||||||||    
T  16093580 ttttcactcaaaaatccattttttaacttttccaggttcaatctcaatctaaaaacttgccaaatcattattatacatatccaggcactcaaaaccatc 16093482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 20958497 - 20958619
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaac-ttctccataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    ||||||| |||||||||| || ||||||||  ||||||||||||||||||   | | ||  | ||||||| ||||||||| |||||||| |||||||||     
T  20958497 gggtgctatcgggaacttgacatttttcaccaaaaaatcccatttttaacgaaccctatgttcaatttcaatctaaaaacttgcctaataattcttatat 20958596  T
Q  124 acattctggcactcaaaaccatc 146  Q
    |  ||  ||||||||||||||||    
T  20958597 atgttaaggcactcaaaaccatc 20958619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 47191012 - 47191134
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaa-cttctccataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||| |||| || || ||||||||  ||||||| ||| ||||| |||| ||||  |  |||||| ||||||||| || ||||||||||||||||    
T  47191012 gggtgctctcaggaatttgacatttttcaccaaaaaatctcatatttaaacttccccatgttccatttcaatctaaaaacttgtctaatcattcttatac 47191111  T
Q  124 acattctggcactcaaaaccatc 146  Q
    | ||||  |||| ||||||||||    
T  47191112 atattcatgcacccaaaaccatc 47191134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 50613827 - 50613706
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| | ||||| |  |||| |||||  ||||  | ||| ||| ||||||||| |||||||||||| |||||||    
T  50613827 gggtgctctcgggaatttgacatttttcaccctaaaattcatttttaaactttcccatgttcaatctcaatctaaaaacttgcctaatcattattataca 50613728  T
Q  125 cattctggcactcaaaaccatc 146  Q
     ||||  |||||||||| ||||    
T  50613727 tattcatgcactcaaaatcatc 50613706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 50621655 - 50621534
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| | ||||| |  |||| |||||  ||||  | ||| ||| ||||||||| |||||||||||| |||||||    
T  50621655 gggtgctctcgggaatttgacatttttcaccctaaaattcatttttaaactttcccatgttcaatctcaatctaaaaacttgcctaatcattattataca 50621556  T
Q  125 cattctggcactcaaaaccatc 146  Q
     ||||  |||||||||| ||||    
T  50621555 tattcatgcactcaaaatcatc 50621534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 50687005 - 50687118
Alignment:
Q  28 tgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacat 127  Q
    |||||||||||| || || |||||||| |||||||||  |||| |||||  |||   | ||| ||| ||||||||| |||||||||||| ||||||| ||    
T  50687005 tgctctcgggaatttgacatttttcacccaaaaatccatttttaaactttcccaggttcaatctcaatctaaaaacttgcctaatcattattatacatat 50687104  T
Q  128 tctggcactcaaaa 141  Q
     | |||||||||||    
T  50687105 acaggcactcaaaa 50687118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 35893764 - 35893812
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||||| || |||||||| |||||||| |||||||||||||    
T  35893764 gctctcgggaacttgacatttttcacccaaaaatctcatttttaacttc 35893812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2080 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold2080
Description:

Target: scaffold2080; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 472 - 351
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||| ||||||||| ||| |||| || ||||||| ||| ||||| ||||||||||||||||||||    
T  472 gggtgctctcgggaacttgacatttttcacccaaaaatctcatttttaatttccccatgatcaatttcaatcttaaaacttgcctaatcattcttataca 373  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| ||||||||||| ||||    
T  372 tattcaggcactcaaaatcatc 351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 8574 - 8692
Alignment:
Q  28 tgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacat 127  Q
    ||||||||||||||| || |||||||| |||||||||||||||||||||| ||||  | ||||||| ||||||||| |||||||||||||||| |||  |    
T  8574 tgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttccccatgttcaatttcaatctaaaaacttgcctaatcattcttaaacatgt 8673  T
Q  128 tctggcactcaaaaccatc 146  Q
    |  ||||||||||||||||    
T  8674 taaggcactcaaaaccatc 8692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 2615 - 2729
Alignment:
Q  32 ctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacattctg 131  Q
    ||||||||||| || |||||||| |||||||||||||||||||||| ||||  | ||||||| ||||||||| |||||||||||||||| |||  ||  |    
T  2615 ctcgggaacttgacatttttcacccaaaaatcccatttttaacttccccatgttcaatttcaatctaaaaacttgcctaatcattcttaaacatgttaag 2714  T
Q  132 gcactcaaaaccatc 146  Q
    |||||||||||||||    
T  2715 gcactcaaaaccatc 2729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 5e-27; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 13591658 - 13591501
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaa-tttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||||||||||| || ||||||||  |||||||||||||||||||||||||   | || ||||| ||||||||| ||||||||||||||||||     
T  13591658 gggtgctctcgggaacttgacatttttcacttaaaaatcccatttttaacttctccaagttcaattttcaatctaaaaacttgcctaatcattcttataa 13591559  T
Q  124 acattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatca 181  Q
    | |||  |||||||||||||||| || |||| |||    || ||||||||||||||||    
T  13591558 atattaaggcactcaaaaccatctaaaacttaacctctaacattaattcacaaaatca 13591501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 152484 - 152600
Alignment:
Q  30 ctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacattc 129  Q
    ||||||||||||| || ||||||||  ||||||| ||||||||||||| ||||  | ||||||| ||||||||| |||||||||||||||||||| ||||    
T  152484 ctctcgggaacttgacatttttcacctaaaaatctcatttttaacttccccatgttcaatttcaatctaaaaacttgcctaatcattcttatacatattc 152583  T
Q  130 tggcactcaaaaccatc 146  Q
     ||||||||||| ||||    
T  152584 aggcactcaaaatcatc 152600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 15792185 - 15792306
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| |||||||| ||||||||||||  ||||  | ||||||| ||||||||| |||||||||||| |||||||    
T  15792185 gggtgctctcgggaatttgacatttttcacccaaaaatctcatttttaactttcccatgttcaatttcaatctaaaaacttgcctaatcattattataca 15792284  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| | ||||||||| ||||    
T  15792285 tattcagacactcaaaatcatc 15792306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 32306706 - 32306585
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||| |||||||||||| || |||||||| |||||||| ||||||||||||| || |  | ||||||| ||||||||| |||||||||||| |||||||    
T  32306706 gggtgatctcgggaacttgacatttttcactcaaaaatctcatttttaacttccccgtgttcaatttcaatctaaaaacttgcctaatcattattataca 32306607  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||  ||||||||||||||||    
T  32306606 tgtttaggcactcaaaaccatc 32306585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 40907462 - 40907583
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| ||||||||||||||| |||||||  | |   ||||||| ||||||||| ||||||||||||||||||||    
T  40907462 gggtgctctcgggaacttgacatttttcacccaaaaatcccattttaaacttctgtacatccaatttcaatctaaaaacttgcctaatcattcttataca 40907561  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||  || |||||||| ||||    
T  40907562 tattaaggtactcaaaatcatc 40907583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 26050206 - 26050085
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||  ||||||||||||| | ||  | ||||||| ||||| ||| ||||||||||||||||||||    
T  26050206 gggtgctctcgggaacttgacatttttcactcaaaaatttcatttttaacttccctatgttcaatttcaatctaagaacttgcctaatcattcttataca 26050107  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| ||||| ||||| ||||    
T  26050106 tgttcaggcacccaaaatcatc 26050085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 14852584 - 14852464
Alignment:
Q  26 ggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacac 125  Q
    ||||||||||||||||| || |||||||  ||||||||||| |||||||||| ||||  | ||||| | |||| |||| ||||||||||||||||||||     
T  14852584 ggtgctctcgggaacttgacgtttttcatccaaaaatcccacttttaacttccccatgttcaattttaatctataaacttgcctaatcattcttatacat 14852485  T
Q  126 attctggcactcaaaaccatc 146  Q
     | | ||||||||||| ||||    
T  14852484 gtccaggcactcaaaatcatc 14852464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 16043426 - 16043544
Alignment:
Q  28 tgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacat 127  Q
    ||||||||||||||| || |||||||| |||||||||||||||||||||| | ||  | ||||||| |||||||   |  ||||||||||||||||| ||    
T  16043426 tgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttccctatgttcaatttcaatctaaaattttttctaatcattcttatacatat 16043525  T
Q  128 tctggcactcaaaaccatc 146  Q
    |  ||||||||||| ||||    
T  16043526 tgaggcactcaaaatcatc 16043544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 183
Target Start/End: Original strand, 27996302 - 27996460
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| ||||||||||| | ||||| ||||||||||||||   ||    ||||| | ||||||||| || |||||||||| || |||    
T  27996302 gggtgctctcgggaacttgacctttttcaccccaaaattccatttttaacttccatatgtccaatttaaatctaaaaacttgtctaatcattcctaaaca 27996401  T
Q  125 cattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatg 183  Q
      ||  |||||||||||||||| || |||| |||  | || ||||||||||||||||||    
T  27996402 ggttaaggcactcaaaaccatctaaaacttgacctccaacattaattcacaaaatcatg 27996460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 14651091 - 14651188
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttata 122  Q
    |||||||||||||||||| || |||||||| |||||| ||||||||||||||| | ||  | | ||||| ||||||||| |||||| |||||||||||    
T  14651091 gggtgctctcgggaacttgacatttttcacccaaaaaccccatttttaacttccctatgttcattttcaatctaaaaacttgcctactcattcttata 14651188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 26789748 - 26789869
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || |  |||||||| |||||||| |||||| |||||  ||||  | ||||||| ||||||||| ||||||||| || |||||||    
T  26789748 gggtgctctcgggaatttgatatttttcacccaaaaatcacattttaaactttcccatgttcaatttcaatctaaaaacttgcctaatcgttattataca 26789847  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| ||||||||||| ||||    
T  26789848 tattcaggcactcaaaatcatc 26789869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 183
Target Start/End: Original strand, 50160558 - 50160709
Alignment:
Q  33 tcgggaacttcacctttttcacacaaaaatcccatttt-taacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacattctg 131  Q
    |||||||||| || ||||| ||  |||||||||||||| ||||||||| ||    | ||| | ||||||||  ||||||||||||||||||||||||  |    
T  50160558 tcgggaacttgacattttttactgaaaaatcccattttctaacttctctatgtccagtttaaatctaaaaatttgcctaatcattcttatacacattaag 50160657  T
Q  132 gcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatg 183  Q
     |||||||||||||| || |||  |||    || ||||||||||||||||||    
T  50160658 acactcaaaaccatctaaaactcgacctctaacattaattcacaaaatcatg 50160709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 10273138 - 10273186
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||||| || |||||||| ||||||||||||||||| ||||    
T  10273138 gctctcgggaacttgacatttttcacccaaaaatcccatttttagcttc 10273186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 14477174 - 14477222
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||||| || |||||||| ||||||||||| ||||||||||    
T  14477174 gctctcgggaacttaacatttttcacccaaaaatcccaattttaacttc 14477222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 19738637 - 19738689
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||||||||| |||||||| || | ||||| ||||||||||||||    
T  19738637 gggtgctctcgggaacttgaccttttttaccccaaaataccatttttaacttc 19738689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 15365630 - 15365535
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattctta 120  Q
    |||| ||||| ||||||| ||||||||||| | |||||||||||||||||| | | |     ||||||||||||||||| |||||| || ||||||    
T  15365630 gggtactctctggaacttgacctttttcaccccaaaatcccatttttaactaccctacgtcaaatttcattctaaaaacttgcctactcgttctta 15365535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 9622034 - 9622074
Alignment:
Q  37 gaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||| || |||||||| ||||||||||||||||||||||    
T  9622034 gaacttgacatttttcacccaaaaatcccatttttaacttc 9622074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 5e-27; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 37428104 - 37428225
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||| ||||||||||||| || |||||||| ||||||||||||||||| |||| | ||  | ||||||| ||||||||| ||||||||||||||||||||    
T  37428104 gggtactctcgggaacttgacatttttcacccaaaaatcccatttttagcttccctatgttcaatttcaatctaaaaacttgcctaatcattcttataca 37428203  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||  ||||||||||||||||    
T  37428204 tattaaggcactcaaaaccatc 37428225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 16839394 - 16839288
Alignment:
Q  13 cgaataatatcagggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaat 112  Q
    ||||||| |||||| |||| |||  ||||| || ||||||||||||||||| |||||||||||||  | |||||||||||||||||||||| ||||||||    
T  16839394 cgaataaaatcaggatgctatcgaaaacttgacatttttcacacaaaaatctcatttttaacttcctcgtaatgaatttcattctaaaaacttgcctaat 16839295  T
Q  113 cattctt 119  Q
    |||||||    
T  16839294 cattctt 16839288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 15246431 - 15246530
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || ||||| || |||||||||||||||||||||| ||||  | ||||||| ||||||||| |||||||||||||| |||||    
T  15246431 gggtgctctcgggaatttgacatttttaacccaaaaatcccatttttaacttccccatgttcaatttcaatctaaaaacttgcctaatcattctcataca 15246530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 15207349 - 15207448
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || ||||| || |||||||||||||||| ||||| ||||  | ||||||| ||||||||| |||||||||||||| |||||    
T  15207349 gggtgctctcgggaatttgacatttttaacccaaaaatcccatttttgacttccccatgttcaatttcaatctaaaaacttgcctaatcattctcataca 15207448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 9578014 - 9578127
Alignment:
Q  27 gtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacaca 126  Q
    |||||||||||||||| || |||||||| | |||||||||||||||||||| | ||  | ||||||| ||||||| | |||||||||||| | |||||      
T  9578014 gtgctctcgggaacttgacatttttcaccccaaaatcccatttttaacttccctatgttcaatttcaatctaaaatcttgcctaatcattatcatacatg 9578113  T
Q  127 ttctggcactcaaa 140  Q
    ||| ||||||||||    
T  9578114 ttcaggcactcaaa 9578127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 23275075 - 23275196
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||||  |||| |||||  |||   | ||| ||| ||||||||| |||||||||||| |||||||    
T  23275075 gggtgctctcgggaacttgacatttttcactcaaaaatccatttttaaactttcccaagttcaatctcaatctaaaaacttgcctaatcattattataca 23275174  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| ||||||||||| ||||    
T  23275175 tattcaggcactcaaaatcatc 23275196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 15265552 - 15265651
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || ||||| || |||||||||||||||||| ||| ||||  | ||||||| || |||||| |||||||||||||| |||||    
T  15265552 gggtgctctcgggaatttgacatttttaacccaaaaatcccatttttaaattccccatgttcaatttcaatcaaaaaacttgcctaatcattctcataca 15265651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 32402691 - 32402568
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctcc-ataatgaatt-tcattctaaaaacctgcctaatcattcttata 122  Q
    |||||||||||||||||| ||  ||||||| |||||||||||| ||||||||| || ||| | |||| | | ||||||||| ||||||| ||||||||||    
T  32402691 gggtgctctcgggaacttgacaattttcacccaaaaatcccatctttaacttccccaatattcaattcttaatctaaaaacttgcctaaccattcttata 32402592  T
Q  123 cacattctggcactcaaaaccatc 146  Q
    ||  ||  ||||||||||||||||    
T  32402591 catcttaaggcactcaaaaccatc 32402568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 316529 - 316651
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctc-cataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    ||||||||||||||| || || |||||||| ||||||||||||||||||  | || | |  | ||| ||| ||||||||| |||||||||||| ||||||    
T  316529 gggtgctctcgggaatttgacatttttcacccaaaaatcccatttttaaaatttctcgtgtttaatctcaatctaaaaacttgcctaatcattattatac 316628  T
Q  124 acattctggcactcaaaaccatc 146  Q
    | |||| ||||||||||| ||||    
T  316629 atattcaggcactcaaaaacatc 316651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 16828779 - 16828707
Alignment:
Q  114 attcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatgatg 186  Q
    |||||||||||||||| |||||| ||||||||| ||||||| | |||| |||||| || ||||||||||||||    
T  16828779 attcttatacacattccggcactgaaaaccatctaagacttgatcaacaacgttatttaacaaaatcatgatg 16828707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 606078 - 605957
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || || ||||| |||||||||  |||| ||||| ||||   | ||| ||| |||| |||  |||||||||||| |||||||    
T  606078 gggtgctctcgggaatttgacattgttcacccaaaaatccatttttaaacttttccaggttcaatctcaatctagaaaattgcctaatcattattataca 605979  T
Q  125 cattctggcactcaaaaccatc 146  Q
    ||||| ||||||||||| ||||    
T  605978 cattcaggcactcaaaatcatc 605957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 23318448 - 23318333
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataa-tgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||||||||||| || |||||| ||| |||||||||||||||||||| ||| || | ||||||| ||||||    |||||||||||||||| ||    
T  23318448 gggtgctctcgggaacttgacatttttcccac-aaaatcccatttttaacttc-ccagaattcaatttcaatctaaatttttgcctaatcattcttaaac 23318351  T
Q  124 acattctggcactcaaaa 141  Q
    |  ||| |||||||||||    
T  23318350 atgttcaggcactcaaaa 23318333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 23412961 - 23412839
Alignment:
Q  25 gggtgctctcgggaacttc-acctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    ||||||||||||||||||  || |||||||| |||||||||  |||| |||||  |||     ||| ||| ||||||||| |||||||||||| ||||||    
T  23412961 gggtgctctcgggaactttgacatttttcactcaaaaatccatttttaaactttcccaggtccaatctcaatctaaaaacttgcctaatcatttttatac 23412862  T
Q  124 acattctggcactcaaaaccatc 146  Q
    | |||| ||||||||||| ||||    
T  23412861 atattcaggcactcaaaatcatc 23412839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 6156489 - 6156537
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||    
T  6156489 gctctcgggaaattgacatttttcacacaaaaatctcatttttaacttc 6156537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 21845950 - 21845903
Alignment:
Q  30 ctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    ||||||||||||| || ||||||||  |||||||||||||||||||||    
T  21845950 ctctcgggaacttgacatttttcaccaaaaaatcccatttttaacttc 21845903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 25201651 - 25201697
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaact 75  Q
    |||||||||||||| || |||||||| |||||||| |||||||||||    
T  25201651 gctctcgggaacttgacatttttcacccaaaaatctcatttttaact 25201697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 48044013 - 48043967
Alignment:
Q  31 tctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||| || |||||||| |||||||| |||||||||||||    
T  48044013 tctcgggaacttgacatttttcacccaaaaatctcatttttaacttc 48043967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 12917850 - 12917802
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||||| || |||||||  |||||||| |||||||||||||    
T  12917850 gctctcgggaacttgacatttttcatccaaaaatctcatttttaacttc 12917802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 15025600 - 15025552
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||| ||||||| || ||||||||  |||||||||||||||||||||    
T  15025600 gctctcaggaacttgacatttttcaccaaaaaatcccatttttaacttc 15025552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 45803860 - 45803816
Alignment:
Q  33 tcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||| || ||||||||  |||||||||||||||||||||    
T  45803860 tcgggaacttgacatttttcaccaaaaaatcccatttttaacttc 45803816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 48630961 - 48631009
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||||| || |||||||| ||||||||  ||||||||||||    
T  48630961 gctctcgggaacttgacatttttcacccaaaaatcttatttttaacttc 48631009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0780 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0780
Description:

Target: scaffold0780; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 3059 - 2938
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||  |||||||||||||||||||||| ||||  | ||| ||| ||||||||| |||||||||||| ||||| |    
T  3059 gggtgctctcgggaacttgacatttttcatccaaaaatcccatttttaacttccccatgttcaatctcaatctaaaaacttgcctaatcattattatata 2960  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||  ||||||||||||||||    
T  2959 tattaaggcactcaaaaccatc 2938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 55395 - 55274
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||| || |||||||||| ||||  | ||||| | ||||||||| ||||||||||||||||||||    
T  55395 gggtgctctcgggaacttgacatttttcacccaaaaatctcacttttaacttccccatgttcaattttaatctaaaaacttgcctaatcattcttataca 55296  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| ||||||||||| ||||    
T  55295 tgttcaggcactcaaaatcatc 55274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 37864 - 37743
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||| |||||||| || || |||||||| ||||||||||| |||||||||  ||||  | ||||||| ||||||||| | ||||||||||||||||||    
T  37864 gggtgcactcgggaatttgacatttttcacccaaaaatcccacttttaactttcccatgttcaatttcaatctaaaaactttcctaatcattcttataca 37765  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||||||||||||||| ||||    
T  37764 tattctggcactcaaaatcatc 37743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 332726 - 332847
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| |||||||||||||||||||||  ||||  | ||| ||| ||||||||| | ||||||||||||||||||    
T  332726 gggtgctctcgggaatttgacatttttcacccaaaaatcccatttttaactttcccatgttcaatctcaatctaaaaactttcctaatcattcttataca 332825  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| ||||||||||| ||||    
T  332826 tattcaggcactcaaaatcatc 332847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1419 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold1419
Description:

Target: scaffold1419; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 433 - 554
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| |||||||||||||||||||||  | ||  | ||||||| ||||||||| ||||||||||||||| ||||    
T  433 gggtgctctcgggaatttgacatttttcacccaaaaatcccatttttaactttcctatgttcaatttcaatctaaaaacttgcctaatcattcttgtaca 532  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| |||| |||||||||||    
T  533 tgttcaggcattcaaaaccatc 554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 17894 - 17777
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacatt 128  Q
    |||||||||||||| || |||||||| | |||||||||||||||||||| ||||  | ||||||| ||||||||  |||||||||||||||| |||  ||    
T  17894 gctctcgggaacttgacatttttcacccgaaaatcccatttttaacttccccatgttcaatttcaatctaaaaaattgcctaatcattcttaaacatgtt 17795  T
Q  129 ctggcactcaaaaccatc 146  Q
      ||||||||||||||||    
T  17794 aaggcactcaaaaccatc 17777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 13729 - 13850
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||||||  | |||||||| |||||||||||||||||||||| |  || | ||||||| ||| ||||| ||||||| ||||||||||||    
T  13729 gggtgctctcgggaacttgtcatttttcacccaaaaatcccatttttaacttccctctattcaatttcaatctgaaaacttgcctaaccattcttataca 13828  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||  ||||||||||||||||    
T  13829 tgttaaggcactcaaaaccatc 13850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 22606 - 22727
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || ||||||||  ||||||||||||||||||||| |  |  | ||||||| ||| ||||| ||||||| ||||||||||||    
T  22606 gggtgctctcgggaacttgacatttttcaccaaaaaatcccatttttaacttccctttgttcaatttcaatcttaaaacttgcctaaccattcttataca 22705  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||  || |||||||||||||    
T  22706 tgttaaggtactcaaaaccatc 22727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 75559 - 75460
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||| ||||||| || |||||||| ||||||||||||||||| ||||||  |  | ||||||| ||||||||| ||||||||||||||||||||    
T  75559 gggtgctctctggaacttgacatttttcacccaaaaatcccatttttatcttctctctggtcaatttcaatctaaaaacttgcctaatcattcttataca 75460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0914 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0914
Description:

Target: scaffold0914; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 2115 - 2236
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||| ||||| || || |||||||| |||||||||||||||||||||  ||||  | ||||||| ||||||||| || ||||||||| |||||||    
T  2115 gggtgctcttgggaatttgacatttttcacccaaaaatcccatttttaactttcccatgttcaatttcaatctaaaaacttgtctaatcattattataca 2214  T
Q  125 cattctggcactcaaaaccatc 146  Q
     ||||  |||||||||| ||||    
T  2215 tattccagcactcaaaaacatc 2236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0750 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 4006 - 4127
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||| ||| || || |||||||| |||||||||||||||| ||||| ||||  | ||||||| ||||||||| |||||||| ||| |||||||    
T  4006 gggtgctctcgagaatttgacatttttcacccaaaaatcccattttttacttccccatgttcaatttcaatctaaaaacttgcctaattattattataca 4105  T
Q  125 cattctggcactcaaaaccatc 146  Q
     ||||  |||||||||| ||||    
T  4106 tattccagcactcaaaaacatc 4127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 3566 - 3687
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||| |||||||||| || |||||||| | |||||||||| ||||||||| ||||  | ||||||| ||||||||| ||||||||||||||||  ||    
T  3566 gggtgctttcgggaacttgacatttttcacccgaaaatcccatatttaacttccccatgtttaatttcaatctaaaaacttgcctaatcattcttaagca 3665  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||  ||||||||||||||||    
T  3666 tgttaaggcactcaaaaccatc 3687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 19378 - 19257
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||| |||| |||||||| || |||||||| |||||||||||||||||||||  ||||  | ||| ||| ||||||||| |||||||||||||||| |||    
T  19378 gggtactcttgggaacttgacatttttcacccaaaaatcccatttttaactttcccatgttcaatctcaatctaaaaacttgcctaatcattcttacaca 19279  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| |||| |||||| ||||    
T  19278 tattcaggcattcaaaatcatc 19257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 26 - 146
Target Start/End: Original strand, 9299 - 9419
Alignment:
Q  26 ggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacac 125  Q
    |||||| |||||||||| || |||||| | ||||||||||| |||||||| | || |  | ||||||| ||||||||| || |||||||||||||||||     
T  9299 ggtgctgtcgggaacttgacatttttcgcccaaaaatcccaattttaactccaccttgttcaatttcaatctaaaaacttgtctaatcattcttatacat 9398  T
Q  126 attctggcactcaaaaccatc 146  Q
    |||| ||||||||||| ||||    
T  9399 attcaggcactcaaaatcatc 9419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 10539 - 10637
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||| ||||||| || ||||| || |||||||||||||||||||||| | ||  | ||||||| ||||| ||| |||||||||||||||||||    
T  10539 gggtgctctcaggaacttgacatttttaacccaaaaatcccatttttaacttccctatgttcaatttcaatctaagaacttgcctaatcattcttatac 10637  T

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Target: scaffold0293 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 65 - 183
Target Start/End: Original strand, 17933 - 18051
Alignment:
Q  65 catttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacattctggcactcaaaaccatcaaagactttaccaaccac 164  Q
    ||||||||||||| |||| || ||||||| ||||||||| ||||||||||||||||||||  | | |||||||||||||||| || |||  ||| |  |     
T  17933 catttttaacttccccatgatcaatttcaatctaaaaacttgcctaatcattcttatacatgtccaggcactcaaaaccatctaacactcgacccaaaag 18032  T
Q  165 gttaattcacaaaatcatg 183  Q
    ||||| |||||||||||||    
T  18033 gttaaatcacaaaatcatg 18051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 206236 - 206114
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaa-cttctccataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||||||||||| || |||||||| |||||| | |||||| || ||| ||||   | ||||||| ||||||||| ||| |||||||||||||||    
T  206236 gggtgctctcgggaacttgacatttttcacccaaaaacctcattttaaaacttttccaagttcaatttcaatctaaaaacttgcttaatcattcttatac 206137  T
Q  124 acattctggcactcaaaaccatc 146  Q
    | |||| ||||||||||| ||||    
T  206136 atattcaggcactcaaaatcatc 206114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 1027 - 1125
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    ||||||||||||||| || || |||||||| |||||||||||||||||||||| ||||    ||| ||| ||| ||||| |||||||||||||||||||    
T  1027 gggtgctctcgggaatttgacatttttcacccaaaaatcccatttttaacttccccatgtgcaatgtcaatctgaaaacttgcctaatcattcttatac 1125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 60425 - 60312
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| |  || |||||||| |||||||||  |||| |||||  ||||  | ||| ||| ||||||||| |||||||||||| |||||||    
T  60425 gggtgctctcgggaattcgacatttttcacccaaaaatccatttttaaactttcccatgttcaatctcaatctaaaaacttgcctaatcattattataca 60326  T
Q  125 cattctggcactca 138  Q
      ||| ||||||||    
T  60325 tgttcaggcactca 60312  T

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Target: scaffold0005 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 166201 - 166104
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttata 122  Q
    |||||||||||||||||| || |||||||| |||||| ||||||||||||||| | ||  | | ||||| ||||||||| |||||| |||||||||||    
T  166201 gggtgctctcgggaacttgacatttttcacccaaaaaccccatttttaacttccctatgttcattttcaatctaaaaacttgcctactcattcttata 166104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 372 - 257
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| ||||||||||||||||||||||  |||  | ||| ||| ||| ||||| ||||||||||||  ||||||    
T  372 gggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttcctcatgttcaatctcaatct-aaaacttgcctaatcattaatataca 274  T
Q  125 cattctggcactcaaaa 141  Q
     || | |||||||||||    
T  273 tatccaggcactcaaaa 257  T

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Target: scaffold0076 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 24308 - 24186
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaa-cttctccataatgaatttcattctaaaaacctgcctaatcattcttatac 123  Q
    |||||||||||||||||| |||||||| || |||||||||||||||||| ||  ||||   | ||| ||| ||||||| | |||||||||||| |||||     
T  24308 gggtgctctcgggaacttgaccttttttacccaaaaatcccatttttaaactattccaggttcaatctcaatctaaaagcttgcctaatcattattatat 24209  T
Q  124 acattctggcactcaaaaccatc 146  Q
    | |||| ||||||||||| ||||    
T  24208 atattcaggcactcaaaatcatc 24186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 14111 - 13994
Alignment:
Q  30 ctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttca-ttctaaaaacctgcctaatcattcttatacacatt 128  Q
    ||||||||||||| || |||||||| ||||||||| ||||| ||| || ||| | | ||||||| |||||||||| |||||||||| | ||||| | |||    
T  14111 ctctcgggaacttgacatttttcacccaaaaatcctattttaaacctccccagattcaatttcaattctaaaaacttgcctaatcaatattatatatatt 14012  T
Q  129 ctggcactcaaaaccatc 146  Q
    | ||||||||||| ||||    
T  14011 caggcactcaaaatcatc 13994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 220916 - 220795
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| |||||||  ||||||||||||| | ||  | ||||||| ||||||||| || | ||||||||||| |||    
T  220916 gggtgctctcgggaatttgacatttttcacccaaaaatttcatttttaacttccctatgttcaatttcaatctaaaaacttgtcgaatcattcttacaca 220817  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| |||||||||| |||||    
T  220816 tgttcaggcactcaaacccatc 220795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 85955 - 86076
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| |||||||| |||||||||||||  | |  | ||| ||| ||||||||  ||||||||||||  ||||||    
T  85955 gggtgctctcgggaacttgacatttttcacccaaaaatctcatttttaacttcctcctgttcaatctcaatctaaaaatttgcctaatcattaatataca 86054  T
Q  125 cattctggcactcaaaaccatc 146  Q
     || | ||||||||||| ||||    
T  86055 tatccaggcactcaaaatcatc 86076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 10883 - 10935
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||||||||| || |||||||| ||||||||||||||||||||||    
T  10883 gggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttc 10935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 29155 - 29103
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||||||||| || |||||||| ||||||||||||||||||||||    
T  29155 gggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttc 29103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0716 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 1459 - 1510
Alignment:
Q  26 ggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    ||||||||||||||||| || |||||||| ||||||||||||||||||||||    
T  1459 ggtgctctcgggaacttgacatttttcacccaaaaatcccatttttaacttc 1510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0716; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 1602 - 1650
Alignment:
Q  98 aaaaacctgcctaatcattcttatacacattctggcactcaaaaccatc 146  Q
    |||||| ||||||||||||||||||||  ||  ||||||||||||||||    
T  1602 aaaaacttgcctaatcattcttatacatgttacggcactcaaaaccatc 1650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 7064 - 7185
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| |  |||||||| |||||||||  |||| |||||  |||   | ||| ||| ||||||||| |||||||||||| |||||||    
T  7064 gggtgctctcgggaacttgatatttttcactcaaaaatccatttttaaactttcccaggttcaatctcaatctaaaaacttgcctaatcattattataca 7163  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| | ||||||||| ||||    
T  7164 tattcagtcactcaaaatcatc 7185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 7941 - 8055
Alignment:
Q  28 tgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacat 127  Q
    |||||||||||| || || |||||||| |||||| ||||||||||||||| | ||  | ||||||  ||||||||    |||||||||||||||| | ||    
T  7941 tgctctcgggaaattgacatttttcacccaaaaaccccatttttaacttccctatgttcaatttccatctaaaaa----cctaatcattcttatatatat 8036  T
Q  128 tctggcactcaaaaccatc 146  Q
    |  ||||||||||||||||    
T  8037 taaggcactcaaaaccatc 8055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 3104 - 3225
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| |||||||||  |||| |||||  |||   | ||| ||| ||||||||| |||||||||||| || ||||    
T  3104 gggtgctctcgggaatttgacatttttcacccaaaaatccatttttaaactttcccaagttcaatctcaatctaaaaacttgcctaatcattattgtaca 3203  T
Q  125 cattctggcactcaaaaccatc 146  Q
     |||| ||||||||||| ||||    
T  3204 tattcaggcactcaaaatcatc 3225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 57258 - 57378
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| |||||| || |||||||||||| | ||  | ||||||| ||||||||| ||||| || ||||||||| |    
T  57258 gggtgctctcgggaatttgacatttttcacccaaaaaccctatttttaacttccctatgttcaatttcaatctaaaaacttgcctgat-attcttatata 57356  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||  ||||||||||||||||    
T  57357 tgttaaggcactcaaaaccatc 57378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 80672 - 80793
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || |||||||| |||||||||  |||| |||||  |||   | ||| ||| ||||||||| |||||||||||| |||||||    
T  80672 gggtgctctcgggaatttgacatttttcacccaaaaatccatttttaaactttcccaggttcaatctcaatctaaaaacttgcctaatcattattataca 80771  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||| ||||||||||| ||||    
T  80772 tgttcaggcactcaaaatcatc 80793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1403 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1403
Description:

Target: scaffold1403; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 960 - 1075
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    ||||||||||||||| || || ||||||||| ||||||||  |||| |||||  |||   | ||| ||| ||||||||  |||||||||||| |||||||    
T  960 gggtgctctcgggaatttgacatttttcacaaaaaaatccatttttaaactttcccaggttcaatctcaatctaaaaat-tgcctaatcattattataca 1058  T
Q  125 cattctggcactcaaaa 141  Q
    ||||| |||||||||||    
T  1059 cattcaggcactcaaaa 1075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 146
Target Start/End: Original strand, 25517 - 25637
Alignment:
Q  26 ggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacac 125  Q
    ||||||||||| || || || |||||||| |||||||||  |||| ||||| ||||   | ||| ||| ||||||||| |||||||||||| |||||||     
T  25517 ggtgctctcggaaatttgacatttttcacccaaaaatccatttttaaacttttccaagttcaatctcaatctaaaaacttgcctaatcattattatacat 25616  T
Q  126 attctggcactcaaaaccatc 146  Q
     ||| ||||||||||| ||||    
T  25617 tttcaggcactcaaaatcatc 25637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 37; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 55410 - 55462
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||||||||| || |||||||| |||||||| |||||||||||||    
T  55410 gggtgctctcgggaacttgacatttttcacccaaaaatctcatttttaacttc 55462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 53107 - 52993
Alignment:
Q  28 tgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacat 127  Q
    |||||||||||  || || |||||||| ||||||||| |||||||||||||| |||   || || | ||||||||| ||||||||||||| || |||  |    
T  53107 tgctctcgggagtttgacatttttcactcaaaaatcctatttttaacttctctatatccaaatttaatctaaaaacatgcctaatcattcctaaacaggt 53008  T
Q  128 tctggcactcaaaac 142  Q
    |  ||||||||||||    
T  53007 taaggcactcaaaac 52993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 37; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 39623 - 39575
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||||| || |||||||| ||||||||||||||||||||||    
T  39623 gctctcgggaacttgacatttttcacccaaaaatcccatttttaacttc 39575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 44305 - 44257
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||||| || |||||||| |||||||| |||||||||||||    
T  44305 gctctcgggaacttgacatttttcacccaaaaatctcatttttaacttc 44257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 8537 - 8628
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcatt 116  Q
    |||||||||||||||||| || |||||||| |||||||||  |||| |||||  |||  || ||| ||| ||||||||| ||||||||||||    
T  8537 gggtgctctcgggaacttgacttttttcactcaaaaatccatttttaaactttcccaggatcaatctcaatctaaaaacttgcctaatcatt 8628  T

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Target: scaffold0042 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 28858 - 29012
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacatt 128  Q
    ||||||||||  || || |||||||| |||||||||||||||||||||||| ||    || || | ||||||||| ||||||||||||| || ||   ||    
T  28858 gctctcgggagtttgacatttttcactcaaaaatcccatttttaacttctctatgcctaaatttaatctaaaaacttgcctaatcattcctaaacgggtt 28957  T
Q  129 ctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatg 183  Q
      |||||||||||||||| || |||  |||    || ||||||||||||||||||    
T  28958 aaggcactcaaaaccatctaaaactcgacctctaacattaattcacaaaatcatg 29012  T

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Target: scaffold0338 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 11298 - 11177
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttataca 124  Q
    |||||||||||||||||| || |||||||| ||||||  ||||||||| |||||| ||    ||||    || |||||  ||||||||||||||||||||    
T  11298 gggtgctctcgggaacttaacatttttcacccaaaaacaccatttttagcttctctatgtccaattctgatccaaaaatttgcctaatcattcttataca 11199  T
Q  125 cattctggcactcaaaaccatc 146  Q
      ||  ||||||||||||||||    
T  11198 tgttaaggcactcaaaaccatc 11177  T

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Target: scaffold0859 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 4338 - 4422
Alignment:
Q  98 aaaaacctgcctaatcattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcat 182  Q
    |||||| ||||||||||||||||||||  ||  |||||||||||||||  || |||| ||| |  ||||||||| ||||||||||    
T  4338 aaaaacttgcctaatcattcttatacatgttaaggcactcaaaaccatataaaacttgacccaaaacgttaatttacaaaatcat 4422  T

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Target: scaffold0859; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 4263 - 4311
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    ||||||||||  || || |||||||| ||||||||||||||||||||||    
T  4263 gctctcgggagtttgacatttttcactcaaaaatcccatttttaacttc 4311  T

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Target: scaffold0285 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 19295 - 19343
Alignment:
Q  29 gctctcgggaacttcacctttttcacacaaaaatcccatttttaacttc 77  Q
    |||||||||||||| || || ||||| ||||||||||||||||||||||    
T  19295 gctctcgggaacttgacattattcactcaaaaatcccatttttaacttc 19343  T

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Target: scaffold0139 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 38708 - 38820
Alignment:
Q  26 ggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacac 125  Q
    |||||||||||||| || || |||||||| ||||||||  ||||| |||||  |||   | ||| ||| ||||||||| |||||||||||| |||||||     
T  38708 ggtgctctcgggaatttgacatttttcacccaaaaatctaattttaaactttcccaggttcaatctcaatctaaaaacttgcctaatcattattatacat 38807  T
Q  126 attctggcactca 138  Q
    ||||  |||||||    
T  38808 attcacgcactca 38820  T

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Target: scaffold1551 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold1551
Description:

Target: scaffold1551; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 402 - 307
Alignment:
Q  25 gggtgctctcgggaacttcacctttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattctta 120  Q
    |||| ||||| ||||||| ||||||||||| | |||||||||||||||||| | | |     ||||||||||||||||| |||||| || ||||||    
T  402 gggtactctctggaacttgacctttttcaccccaaaatcccatttttaactaccctacgtcaaatttcattctaaaaacttgcctactcgttctta 307  T

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Target: scaffold0109 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 35587 - 35541
Alignment:
Q  95 tctaaaaacctgcctaatcattcttatacacattctggcactcaaaa 141  Q
    ||||||||| |||||||||||| ||||||| |||| |||||||||||    
T  35587 tctaaaaacttgcctaatcattattatacatattcaggcactcaaaa 35541  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 179
Target Start/End: Original strand, 95887 - 96019
Alignment:
Q  47 tttttcacacaaaaatcccatttttaacttctccataatgaatttcattctaaaaacctgcctaatcattcttatacacattctggcactcaaaaccatc 146  Q
    |||||||| |||||||| |||| |||||||||| ||  | |||||   || |||||| ||||||||||||| || |||  ||  ||||||||||||||||    
T  95887 tttttcactcaaaaatctcattcttaacttctctatgttcaattttgatccaaaaacttgcctaatcattcctaaacaggttaaggcactcaaaaccatc 95986  T
Q  147 aaagactttaccaaccacgttaattcacaaaat 179  Q
     || |||| |||    || ||||||||||||||    
T  95987 taaaacttgacctctaacattaattcacaaaat 96019  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 398145 - 398233
Alignment:
Q  95 tctaaaaacctgcctaatcattcttatacacattctggcactcaaaaccatcaaagactttaccaaccacgttaattcacaaaatcatg 183  Q
    ||||||||| ||||||||||||| || |||  ||  |||||||||||||||| || |||| |||    || ||||||||||||||||||    
T  398145 tctaaaaacttgcctaatcattcctaaacaggttaaggcactcaaaaccatctaaaacttgacctttaacattaattcacaaaatcatg 398233  T

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