View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_56 (Length: 411)
Name: NF7829A_low_56
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 38 - 405
Target Start/End: Original strand, 4968783 - 4969162
Alignment:
| Q |
38 |
aatatatatcattctgacggagtaacataacatcattcatccgacgattcaaataacttgtctatcgtgagagacttgcttcacttgcccaccctagcat |
137 |
Q |
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| T |
4968783 |
aatatatatcattctgatggtgtaacataacatcatttatcggacgattcaaataacttgtccatcgtgagagacttgcttcacttgcccaccctagcat |
4968882 |
T |
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| Q |
138 |
ccgcgccaagttcactttgttttgaaacataacttctttc----------aattctttgtaatttcaattcctcatgtttaacatccaaatcgttgaaca |
227 |
Q |
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| T |
4968883 |
cggcgccaagttcactttgttttgaaacataacttctttcggttcagttcaattctttgtaatttcaattcctcatatttaacatccaaatcgttgaaca |
4968982 |
T |
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| Q |
228 |
tttctttaaaccaaaacattttccaaaactatcaatacataccatcacacacataaggtttttcagattatc--ataacttgtcttgtctaagattcaat |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4968983 |
tttctttaaaccaaaacattttccaaaactatcaatacacaccatcacacacataaggtttttcagattatcagataacttgtcttgtctaagattcaat |
4969082 |
T |
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| Q |
326 |
attcgtaatgattaaataatcttttgatgttggtttggtgcacttcacaattaaccaatttttcgagatcaaagaacaac |
405 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4969083 |
attcacaatgattaaataatcttttgatgttggtttggtgcacttcacaattaaccaatttttcgagatcaaagaacaac |
4969162 |
T |
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