View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_58 (Length: 407)
Name: NF7829A_low_58
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 133 - 403
Target Start/End: Original strand, 50216221 - 50216492
Alignment:
| Q |
133 |
gcagcttctcaccttcttatatgctgctcgttcgttagcaagtgtagcttggtagtctcgatgataaggtatcgtctcggaaaccaaactttaaaagatg |
232 |
Q |
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| T |
50216221 |
gcagcttctcaccttcttatatgctgctcgttcgttagcaagtgtagcttggtagtctcgatgataaggtatcgtctcggaaaccaaactttaaaagatg |
50216320 |
T |
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| Q |
233 |
cgaagataatacattaagatacaaaaatggaaaggttata-cttaatttaactgcaaatttatgtgtttaaagaaaatccataaaccgtcaatattttac |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
50216321 |
cgaagataatacattaagatacaaaaatggaaaggttataccttaatttaactgcaaatttatgtgtttaaagaaaatccataaaccgtcaatgttttac |
50216420 |
T |
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| Q |
332 |
cttataaatctaaggagcatgatgtacaaatcaactacattattctcctcccggtagacacgtgcctgttta |
403 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
50216421 |
cttataaatctaaggagcatgatgtacaaatcgactacattattctcctcccggtagacacgtgcctgttta |
50216492 |
T |
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