View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_60 (Length: 405)
Name: NF7829A_low_60
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_60 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Complemental strand, 2842922 - 2842530
Alignment:
| Q |
13 |
atggacatcagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaggg |
112 |
Q |
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| T |
2842922 |
atggaaatgagacaatacgagaggttaattgaagaaagagtttcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaggg |
2842823 |
T |
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| Q |
113 |
agaatcnnnnnnnggaaaaggaacttgaaacttataggcaaatgagtttgacagaaagttgcgagttgcattcgaagtcagcagaggtgcggcttagtga |
212 |
Q |
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| T |
2842822 |
aaaatctttttttggaaaaggaacttgaaacttttaggcaaatgagtttgacagaaagttgcgagttgcattcgaagtcagcagaggtgcggcttagtga |
2842723 |
T |
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| Q |
213 |
atggaaacgaagctcgccactttcatttgaaacatgtgatgatccatcacagatcgaaagtactgtacctattgttaagcaagattgtacgaataataca |
312 |
Q |
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| T |
2842722 |
atggaaacgaagctcgccactttcatttgaaacatgtgatgatccatcacagatcgaaagtactgtacttattgttaagcaagattgtaccaataataca |
2842623 |
T |
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| Q |
313 |
gaacatgaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctgatgttctt |
405 |
Q |
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| T |
2842622 |
gaacatgaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctgatgttctt |
2842530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 2838821 - 2838683
Alignment:
| Q |
13 |
atggacatcagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaggg |
112 |
Q |
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| T |
2838821 |
atggaaatgagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaagg |
2838722 |
T |
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| Q |
113 |
agaatcnnnnnnnggaaaaggaacttgaaacttataggc |
151 |
Q |
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| T |
2838721 |
agaatctctttttggaaaaggaacttgaaagttataggc |
2838683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 405
Target Start/End: Complemental strand, 2838590 - 2838504
Alignment:
| Q |
319 |
gaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctgatgttctt |
405 |
Q |
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| T |
2838590 |
gaagaggtggaggaaaacagtcaacacaaggatcaagcgtgcaatgatatgcatagatccttttatgatactgagtctgatgttctt |
2838504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 2838679 - 2838645
Alignment:
| Q |
230 |
cactttcatttgaaacatgtgatgatccatcacag |
264 |
Q |
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| T |
2838679 |
cactttcatttgaaacttgtgatgatccatcacag |
2838645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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