View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_62 (Length: 402)
Name: NF7829A_low_62
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_62 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Original strand, 2905996 - 2906382
Alignment:
| Q |
16 |
acatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2905996 |
acatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatct |
2906095 |
T |
|
| Q |
116 |
agactaatgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcg |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2906096 |
agactagtgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcg |
2906195 |
T |
|
| Q |
216 |
ctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccaccaccaataggggaatgagaaggggattttg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
2906196 |
ctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacacgacgctctccaccgccgccaccaacaggggaatgagaaggggattttg |
2906295 |
T |
|
| Q |
316 |
taccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtat |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2906296 |
taccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtat |
2906382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Original strand, 2853968 - 2854354
Alignment:
| Q |
16 |
acatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2853968 |
acatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatccattaagacatttacaacggaatttcactttatct |
2854067 |
T |
|
| Q |
116 |
agactaatgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcg |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2854068 |
agactagtgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctcaacaaaatcatcattatggtggtgttcttcctcg |
2854167 |
T |
|
| Q |
216 |
ctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccaccaccaataggggaatgagaaggggattttg |
315 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| ||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2854168 |
ctgccgccaccaaattcatctcccatctccacaactgtgccaaattgaacccgacactcctcaccgccaccaccaacaggggaatgagaaggggattttg |
2854267 |
T |
|
| Q |
316 |
taccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtat |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2854268 |
taccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattaccataattgtttgtat |
2854354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University