View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_65 (Length: 399)

Name: NF7829A_low_65
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_65
NF7829A_low_65
[»] chr5 (5 HSPs)
chr5 (10-216)||(5805221-5805427)
chr5 (281-399)||(5805038-5805156)
chr5 (284-318)||(33122639-33122673)
chr5 (284-319)||(16870240-16870275)
chr5 (288-316)||(31738343-31738371)
[»] chr4 (1 HSPs)
chr4 (8-216)||(39672422-39672630)
[»] chr3 (2 HSPs)
chr3 (79-215)||(47290335-47290471)
chr3 (284-336)||(39022659-39022711)
[»] chr8 (1 HSPs)
chr8 (100-192)||(10388325-10388417)
[»] chr1 (2 HSPs)
chr1 (288-336)||(50597466-50597514)
chr1 (285-313)||(18376444-18376472)
[»] chr2 (3 HSPs)
chr2 (285-319)||(9557297-9557331)
chr2 (286-323)||(21372057-21372094)
chr2 (288-336)||(18953375-18953423)
[»] chr7 (1 HSPs)
chr7 (285-325)||(43881112-43881152)


Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 5805427 - 5805221
Alignment:
Q  10 ggtgttgctacgggaagacatttggatgaactgtgtagggatgagtatcctacttgggctaggattgttctttggttgatgactgaagttgctttaattg 109  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5805427 ggtgttgctacgggaagacatttggctgaactttgtagagatgagtatcctacttgggctaggattgttctttggttgatgactgaagttgctttaattg 5805328  T
Q  110 gttctgatattcaagaggttattggtagtgctattgctattaggattttgagtaatggtcttgttcctctttgggctggtgttgtcattactgctttaga 209  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5805327 gttctgatattcaagaggttattggtagtgccattgctattaggattttgagtaatggccttgttcctctttgggctggtgttgtcattactgctttaga 5805228  T
Q  210 ttggtaa 216  Q
    |||||||    
T  5805227 ttggtaa 5805221  T

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Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 281 - 399
Target Start/End: Complemental strand, 5805156 - 5805038
Alignment:
Q  281 aagtaggtttaaatatgattttagtctctgcaattatagcattatctggttttagtagtttcnnnnnnngtttggatcatgaccctgcaaacttaaaaac 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  5805156 aagtaggtttaaatatgattttagtctctgcaattatagcattatctggttttagtagtttctttttttgtttggatcatgaccctgcaaacttaaaaac 5805057  T
Q  381 cgttatttttagtctttga 399  Q
    | |||||||||||||||||    
T  5805056 ctttatttttagtctttga 5805038  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 318
Target Start/End: Complemental strand, 33122673 - 33122639
Alignment:
Q  284 taggtttaaatatgattttagtctctgcaattata 318  Q
    |||||||||||||||||||||||||||||||||||    
T  33122673 taggtttaaatatgattttagtctctgcaattata 33122639  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 319
Target Start/End: Complemental strand, 16870275 - 16870240
Alignment:
Q  284 taggtttaaatatgattttagtctctgcaattatag 319  Q
    ||||||||||||||||||||||| ||||||||||||    
T  16870275 taggtttaaatatgattttagtccctgcaattatag 16870240  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 316
Target Start/End: Original strand, 31738343 - 31738371
Alignment:
Q  288 tttaaatatgattttagtctctgcaatta 316  Q
    |||||||||||||||||||||||||||||    
T  31738343 tttaaatatgattttagtctctgcaatta 31738371  T

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Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 39672422 - 39672630
Alignment:
Q  8 ttggtgttgctac-gggaagacatttggatgaactgtgtagggatgagtatcctacttgggctaggattgttctttggttgatgactgaagttgctttaa 106  Q
    ||||||| ||||| |||||| ||||||| ||| || |||||||| ||||||||||  |||||||||  ||| |||||| | ||| ||||  ||||| | |    
T  39672422 ttggtgtggctacagggaag-catttggctgagctttgtagggaggagtatcctagatgggctaggtatgtgctttgggttatggctgagtttgctctta 39672520  T
Q  107 ttggttctgatattcaagaggttattggtagtgctattgctattaggattttgagtaatggtcttgttcctctttgggctggtgttgtcattactgcttt 206  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||| | ||||||||  || |||||||||||||||||||||||||||||||| |    
T  39672521 ttggttctgacatacaagaggttattggtagtgctattgctattaggattcttagtaatggagttattcctctttgggctggtgttgtcattactgctct 39672620  T
Q  207 agattggtaa 216  Q
     |||||||||    
T  39672621 tgattggtaa 39672630  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 47290335 - 47290471
Alignment:
Q  79 ctttggttgatgactgaagttgctttaattggttctgatattcaagaggttattggtagtgctattgctattaggattttgagtaatggtcttgttcctc 178  Q
    |||||||| ||| ||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||  |||| | |||  |||| || | ||||    
T  47290335 ctttggtttatggctgaacttgctttgattggtgctgatattcaagaggttattggtagtgctattgctattcagattcttagtcgtggtgttttgcctc 47290434  T
Q  179 tttgggctggtgttgtcattactgctttagattggta 215  Q
    |||||||||||||| | ||||||||||  ||||||||    
T  47290435 tttgggctggtgttcttattactgcttctgattggta 47290471  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 39022659 - 39022711
Alignment:
Q  284 taggtttaaatatgattttagtctctgcaattatagcattatctggttttagt 336  Q
    |||||||| ||||||||||||||||||||||||| || || | ||||||||||    
T  39022659 taggtttagatatgattttagtctctgcaattatcgctttttttggttttagt 39022711  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 10388325 - 10388417
Alignment:
Q  100 gctttaattggttctgatattcaagaggttattggtagtgctattgctattaggattttgagtaatggtcttgttcctctttgggctggtgtt 192  Q
    ||||| |||| | ||||||||||||||||||||||||||||||||||| ||| |||| | ||  |||| ||| ||||  ||||||||||||||    
T  10388325 gctttgattgctgctgatattcaagaggttattggtagtgctattgctcttaagattcttagccatggacttcttcccatttgggctggtgtt 10388417  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 50597514 - 50597466
Alignment:
Q  288 tttaaatatgattttagtctctgcaattatagcattatctggttttagt 336  Q
    |||||||||||||||||||||| |||||||| |||| | ||||||||||    
T  50597514 tttaaatatgattttagtctctacaattataacattttttggttttagt 50597466  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 18376444 - 18376472
Alignment:
Q  285 aggtttaaatatgattttagtctctgcaa 313  Q
    |||||||||||||||||||||||||||||    
T  18376444 aggtttaaatatgattttagtctctgcaa 18376472  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 319
Target Start/End: Original strand, 9557297 - 9557331
Alignment:
Q  285 aggtttaaatatgattttagtctctgcaattatag 319  Q
    |||||||||||||||| ||||||||||||||||||    
T  9557297 aggtttaaatatgattgtagtctctgcaattatag 9557331  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 323
Target Start/End: Original strand, 21372057 - 21372094
Alignment:
Q  286 ggtttaaatatgattttagtctctgcaattatagcatt 323  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  21372057 ggtttaaatatgatcttagtcactgcaattatagcatt 21372094  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 18953375 - 18953423
Alignment:
Q  288 tttaaatatgattttagtctctgcaattatagcattatctggttttagt 336  Q
    |||||||||||||||||||| | ||| |||||| |||| ||||||||||    
T  18953375 tttaaatatgattttagtctatccaactatagcgttatttggttttagt 18953423  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 43881112 - 43881152
Alignment:
Q  285 aggtttaaatatgattttagtctctgcaattatagcattat 325  Q
    |||||||||||||||||||||   |||||||||||||||||    
T  43881112 aggtttaaatatgattttagttcttgcaattatagcattat 43881152  T

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