View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_69 (Length: 393)
Name: NF7829A_low_69
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_69 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 393
Target Start/End: Original strand, 13384872 - 13385272
Alignment:
| Q |
15 |
gacatcaaaagctcaccgaaacgcctagcatcgataccatcttgattattcttcctgaaatcaattccactttgtctcaaaagctcaattgaatcgtttg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13384872 |
gacatcaaaagctcaccgaaacgcctagcatcgataccatcttgattattcttcttgaaatcaattccactttgtctcaaaagctcaattgaatcatttg |
13384971 |
T |
|
| Q |
115 |
caaaaacatcctcattaacgttaaattctctgaaattaaattactagatacaattgaacaagcttcaac----------------------atatcaaca |
192 |
Q |
| |
|
| ||||||||||||||||| ||||||||||| ||||| |||||| | || ||||||||||| ||||||| ||||||||| |
|
|
| T |
13384972 |
cgaaaacatcctcattaacattaaattctctaaaattgaattaccatatgcaattgaacaaacttcaacataattcaacaagcttcaaaacatatcaaca |
13385071 |
T |
|
| Q |
193 |
ttatcttttagggtttggtaatgataatcataattgctcctgaaattcccaacaggtcgaagaacaataccagggaatgaaaccctaaaagcaaaagaag |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13385072 |
ttatcttttagggtttggtaatgataatcataactgctcctgaaattcccaacatgtcgaagaacaatactagggaatgaaaccctaaaagcaaaagaag |
13385171 |
T |
|
| Q |
293 |
aagaacaacactaataacaaagaaatggaatgattaatcgaaacggtaacggcggtgttacgaaaagtaacacaggtgggaaacaagattcacacctcct |
392 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13385172 |
aacaacaacactaataacaaagaaatgaaatgatttatcgaaacggtaacggtggtgttacgaaaagtaacacaggtgggaaacaagattcacacctcct |
13385271 |
T |
|
| Q |
393 |
a |
393 |
Q |
| |
|
| |
|
|
| T |
13385272 |
a |
13385272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 225 - 393
Target Start/End: Complemental strand, 35713090 - 35712922
Alignment:
| Q |
225 |
attgctcctgaaattcccaacaggtcgaagaacaataccagggaatgaaaccctaaaagcaaaagaagaagaacaacactaataacaaagaaatggaatg |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || | |
|
|
| T |
35713090 |
attgctcctgaaattcccaacaggtcgaagaacaataccagggaatgaaaccctaaaagcaaaagaagaacaacaacactaataacaaagaaatgaaagg |
35712991 |
T |
|
| Q |
325 |
attaatcgaaacggtaacggcggtgttacgaaaagtaacacaggtgggaaacaagattcacacctccta |
393 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35712990 |
attgatcgaaacggtaacggcggtgttacgaaaagtaacacaggtgggaaacaagattcacacctccta |
35712922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 35716896 - 35716687
Alignment:
| Q |
15 |
gacatcaaaagctcaccgaaacgcctagcatcgataccatcttgattattcttcctgaaatcaattccactttgtctcaaaagctcaattgaatcgtttg |
114 |
Q |
| |
|
||||||||||| |||||||||| || ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35716896 |
gacatcaaaaggtcaccgaaacaccaagcatcgataccatcttt-ttattcttcttgaaatcaattccactttgtctcaaaagctcaattgaatcatttg |
35716798 |
T |
|
| Q |
115 |
caaaaacatcctcattaacgttaaattctctgaaattaaattactagatacaattgaacaagcttcaacatatcaacattatcttttagggtttggtaat |
214 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| || || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35716797 |
caaaagcatcctcattaacattaaattctctaaacttgaattaccaggtacaattgaacaagcttcaacatatcaacattatcttttagggtttggtaat |
35716698 |
T |
|
| Q |
215 |
gataatcataa |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
35716697 |
gataatcataa |
35716687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 15 - 167
Target Start/End: Original strand, 816817 - 816969
Alignment:
| Q |
15 |
gacatcaaaagctcaccgaaacgcctagcatcgataccatcttgattattcttcctgaaatcaattccactttgtctcaaaagctcaattgaatcgtttg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
816817 |
gacatcaaaagctcaccgaaacgcctagcatcgataccatcttcattattcttcttgaaatcaattccactttgtctcaaaagctcaattgaatcatttg |
816916 |
T |
|
| Q |
115 |
caaaaacatcctcattaacgttaaattctctgaaattaaattactagatacaa |
167 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| ||||| |||| | |||||||| |
|
|
| T |
816917 |
caaaaacatcctcgttaacattaaattctctaaaattgaattgccagatacaa |
816969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 165 - 270
Target Start/End: Original strand, 817029 - 817134
Alignment:
| Q |
165 |
caattgaacaagcttcaacatatcaacattatcttttagggtttggtaatgataatcataattgctcctgaaattcccaacaggtcgaagaacaatacca |
264 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
817029 |
caattgaataagctttaacatatcaacattatcttttagggtttggtaatgataatcataattgctcttgaaattcccaacaggtcgaagaacaatacca |
817128 |
T |
|
| Q |
265 |
gggaat |
270 |
Q |
| |
|
|||||| |
|
|
| T |
817129 |
gggaat |
817134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 269 - 393
Target Start/End: Complemental strand, 23485628 - 23485506
Alignment:
| Q |
269 |
atgaaaccctaaaagcaaaagaagaagaacaaca---ctaataacaaagaaatggaatgattaatcgaaacggtaacggcggtgttacgaaaagtaacac |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||| |||||| ||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
23485628 |
atgaaaccctaaaagcaaaagaagaagaacaacaacactactaacaa-gaaatgaaatgatt----gaaacagtaacggcggtgttacgaaaagtaacac |
23485534 |
T |
|
| Q |
366 |
aggtgggaaacaagattcacacctccta |
393 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
23485533 |
aggtgggaaacaagattcacacctccta |
23485506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University