View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_74 (Length: 386)
Name: NF7829A_low_74
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_74 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 73 - 381
Target Start/End: Complemental strand, 27430584 - 27430274
Alignment:
| Q |
73 |
ttttacgagtttaattaagcactaacttcactatttgaacacattatcatgttaattattgattttcaaattaattaattttcactatgggaatatatat |
172 |
Q |
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| T |
27430584 |
ttttacgagtttaattaagcacaaacttcactatttgaacaaattatcatgttaattattgattttcaaattaattaattttcactatgggaatatatat |
27430485 |
T |
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| Q |
173 |
ttatttatat--gctttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatcca |
270 |
Q |
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| T |
27430484 |
ttatttatatatgctttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatcca |
27430385 |
T |
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| Q |
271 |
cctctttacaaaacaacctactatgcccatcatacttgtagaatcttgcaaagccctgagatcataatggattctcctcgtgaccagtcttccatgttcc |
370 |
Q |
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| T |
27430384 |
cctctttacaaaacaacctactatgcccatcatacttgtagaatcttgcaaagctctgagatcataatggattctccttgtgaccagtcttccatgttcc |
27430285 |
T |
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| Q |
371 |
ttagctttgac |
381 |
Q |
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| T |
27430284 |
ttagctttgac |
27430274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 185 - 381
Target Start/End: Complemental strand, 27447717 - 27447521
Alignment:
| Q |
185 |
tttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatccacctctttacaaaac |
284 |
Q |
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| T |
27447717 |
tttgcaggaactattacagatgcactcacaaaaatgatcaaggttgcaaagcaataaaacaagtccaaagaattcaagaggatccacctcttcacaggac |
27447618 |
T |
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| Q |
285 |
aacctactatgcccatcatacttgtagaatcttgcaaagccctgagatcataatggattctcctcgtgaccagtcttccatgttccttagctttgac |
381 |
Q |
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| T |
27447617 |
aacctattcaggccatcatacttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgac |
27447521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 27430645 - 27430594
Alignment:
| Q |
6 |
tcaatggagaaagtatgggcnnnnnnngatcttgcacaccgattttccaagg |
57 |
Q |
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| T |
27430645 |
tcaatggagaaagtatgggcaaaaaaagatcttgcacaccgattttccaagg |
27430594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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