View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_8 (Length: 574)
Name: NF7829A_low_8
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 10 - 574
Target Start/End: Complemental strand, 9413227 - 9412663
Alignment:
| Q |
10 |
acatcaccaaacacagaatagtccatttgtcctacaccgtcaaaccatatcaacttttccaatcttccatcttcatctacagtatgcttccagaaaatct |
109 |
Q |
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| T |
9413227 |
acatcaccaaacacagaatagtccatttgtcctacaccgtcaaaccatatcaacttttccaatcttccatcttcatctacagtatgcttccagaaaatct |
9413128 |
T |
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| Q |
110 |
tatcatcagtagatctcattgattcgagaaatccaagggcatcacttgcatctgaaatgttagatcgtctttgcctctctaactgattatacatatctct |
209 |
Q |
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| T |
9413127 |
tatcatcagtagatcccattgattcgagaaatccaagggcatcacttgcatctgaaatgttagatcgtctttgcctctctaactgattatacatatctct |
9413028 |
T |
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| Q |
210 |
ttttctgaatccaaccttttgatacccaccagcctgattggcaaacaaaccgtatatgtgaggggtcctaatcccaacctttctcatgttgttcatttgc |
309 |
Q |
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| T |
9413027 |
ttttctgaatccaaccttttgatacccaccagcctgattggcaaacaaaccgtatatgtgaggggtcctaatcccaacctttctcatgttgttcatttgc |
9412928 |
T |
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| Q |
310 |
aatatatcatattccgtcatcttcctatgtgcaggtaacatgcccataaatttgtcatccaataaggggtgattgtgttcgtcattcaaatatttgatgt |
409 |
Q |
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| T |
9412927 |
aatatatcatactccgtcatcttcctatgtgcaggtaacatgcccataaatttgtcatccaataaggggtgattgtgttcgtcattcaaatatttgatgt |
9412828 |
T |
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| Q |
410 |
accatctcccattggtagcttcaatatgaacacgacattttgccaagcaaccacatctggttcgtagttttgaacgtcgcttcctaatcacccctgcatc |
509 |
Q |
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| T |
9412827 |
accatctcccattggtagcttcaatatgaacacgacattttgccaagcaaccacatctggttcgtagttttgaacgtcgcttcctaatcacccctgcatc |
9412728 |
T |
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| Q |
510 |
aacttttacttgtctagtaccttctctatagcaaaggaaagtctgttgcgttatctcacccttga |
574 |
Q |
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| T |
9412727 |
aacttttacttgtctagtaccttctctatagcaaaggaaagtctgttgcgttatctcacccttga |
9412663 |
T |
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