View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_84 (Length: 378)
Name: NF7829A_low_84
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_84 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 168 - 367
Target Start/End: Original strand, 12974243 - 12974443
Alignment:
| Q |
168 |
tcctctttaataacacttagaatttaaaataaccataatcatatcgatccttctgannnnnnnnnngttgttacattgatcctcatttcatcaaattttt |
267 |
Q |
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| T |
12974243 |
tcctctttaataacacttagaatttaaaataaccataatcatatcgatccttctgatttttttgttgttgttacattgatcctcatttcatcaaattttt |
12974342 |
T |
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| Q |
268 |
atgcaagttaatctttttatcggtttttctactagttgcattatcgtgcatgtcatggcacctttaattgac-gaagatattgtgcacatgatgtccatc |
366 |
Q |
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| T |
12974343 |
atgcaagttaatctttttatcggtttttctattagttgcattatcatgcatgtcatggcacctttaattgacggaagatattgtgcacatgaagtccatc |
12974442 |
T |
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| Q |
367 |
t |
367 |
Q |
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| T |
12974443 |
t |
12974443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 13148141 - 13148247
Alignment:
| Q |
7 |
ataaatgcccattgaaatggcaaggaaatggggtcaaacaatatacctatcttgaagtgtggaaaagtcttggagatataagaatcatatggctcatcaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
13148141 |
ataaatgcccattgaaatggcaaggaaatggggtcaaacaatat--------tgaagtgtggaaaagtcttggagatataagaatcatgtggctcaccaa |
13148232 |
T |
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| Q |
107 |
ttttttagcaagatt |
121 |
Q |
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| T |
13148233 |
ttttttagcaagatt |
13148247 |
T |
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