View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_85 (Length: 376)
Name: NF7829A_low_85
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_85 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 363
Target Start/End: Original strand, 55427510 - 55427858
Alignment:
| Q |
15 |
gacatccgaaattgagatcttatcaatgtcactggaagttatgttttttatcccagtattttctagcccactgcttgtccagttgacaggaaccagaacc |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55427510 |
gacattcgaaattgagatcttatcaatgtcactggaagttatgttttttatcccagcattttctagcccactgcttgtccagttgacaggaaccagaacc |
55427609 |
T |
|
| Q |
115 |
gcccacgccaggaatgctataggaacaaagattttaagtctgcacnnnnnnnnnnnnnnnnnnnncatcagtgatcatattctccaatatggtatattca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
55427610 |
gcccacgccaggaatgctataggaacaaagattttaagtctgcacaaaaagaaacaaaaacaaaacatcagtgatcatattctccaatatggtatattca |
55427709 |
T |
|
| Q |
215 |
aacgctgtccataattattgatgatcataccctaacaagtaaatcctcaagtaaacaacagagtccaatccagcatggtcaataagctcaggttccggca |
314 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55427710 |
aacgctgtccataatgattgatgatcataccctaacaagtaaatcctcaagtaaacagcagagtccaatccagcatggtcaataagctcaggttccggca |
55427809 |
T |
|
| Q |
315 |
ttctaagtgcagccggcatccaattcaaaaaccgaatatatgatgtcca |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
55427810 |
ttctaagtgcagccggcatccaattcaaaaaccgaatatatgatctcca |
55427858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 347
Target Start/End: Complemental strand, 37418500 - 37418404
Alignment:
| Q |
251 |
aagtaaatcctcaagtaaacaacagagtccaatccagcatggtcaataagctcaggttccggcattctaagtgcagccggcatccaattcaaaaacc |
347 |
Q |
| |
|
||||| ||||||||||| ||| |||| ||||| || ||||| ||||| || || |||||||||||| | |||||| |||||||| ||||| |||| |
|
|
| T |
37418500 |
aagtagatcctcaagtatacagcagaatccaagcctgcatgttcaattagttcgggttccggcatttgcaatgcagcaggcatccagttcaagaacc |
37418404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University