View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_86 (Length: 376)
Name: NF7829A_low_86
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_86 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 376
Target Start/End: Original strand, 13039429 - 13039789
Alignment:
| Q |
16 |
atggcattgctgaacttaaacaccgtcatataattgaaacaacacgtactttgcttattaaagtcaatgttcctttgaaattttggggtgacgttgtcct |
115 |
Q |
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| T |
13039429 |
atggcattgttgaacgtaaacatcgtcatataattgaaacaacacgtactttgcttattaatgccaatgttcctttgaaattttggggtgatgctgtcct |
13039528 |
T |
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| Q |
116 |
cactacaggatacttgattaatagaatgccatcatctgcaatccaacacaaggttccccattccatattgttccctgatgaacctttgtttcgtattgct |
215 |
Q |
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| T |
13039529 |
cactacaggatacttgattaatagaatgccatcatctgtaatccaaaacaaggttccccattccatattgttccctgatgaacctttgtttcgtattgct |
13039628 |
T |
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| Q |
216 |
cctcgggtttttggatccacttgctttgttcatgatcttactccaggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctatacaa |
315 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
13039629 |
cctcggatttttggatccacttgctttgttcatgatcttactccaggtttagataaattgtgtgctcgtaaaattaaatgtgtctttctaggctattcaa |
13039728 |
T |
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| Q |
316 |
gagttcaaaaaggatatcggtgctattgtccctccacacaccgcttctacatgtctgctga |
376 |
Q |
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| T |
13039729 |
gagttcaaaaaggatatcggtgctattgtccctccacacatcgcttctacatgtctgctga |
13039789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 20705240 - 20705321
Alignment:
| Q |
195 |
gaacctttgtttcgtattgctcctcgggtttttggatccacttgctttgttcatgatcttactccaggtttagataaattgt |
276 |
Q |
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| T |
20705240 |
gaacctttgtttcatattaatccacgtgtttttggaagtacttgttttgttcatgatctttttccaggtttagataagttgt |
20705321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 376
Target Start/End: Original strand, 17724811 - 17725184
Alignment:
| Q |
16 |
atggcattgctgaacttaaacaccgtcatataattgaaacaacacgtactttgcttattaaagtcaatgttcctttgaaattttggggtgacgttgtcct |
115 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||| | |||||| |
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| T |
17724811 |
atggcattgctgaacgtaaacaccgtcatataattgaaacagcacgtactttgcttattcatgccaatgttcctttgaaattttggggtgatgctgtcct |
17724910 |
T |
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| Q |
116 |
cactacaggatacttgatt-------------aatagaatgccatcatctgcaatccaacacaaggttccccattccatattgttccctgatgaaccttt |
202 |
Q |
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| T |
17724911 |
cactgcaggatacttgattgatagaatggattaatagaatgccatcatctgcaatccaaaacaaggttccccattccatattgttccctgatgaaccttt |
17725010 |
T |
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| Q |
203 |
gtttcgtattgctcctcgggtttttggatccacttgctttgttcatgatcttactccaggtttagataaattgtgtgctcgtgcaattaaatgtgtcttt |
302 |
Q |
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| T |
17725011 |
gtttcgtattgctcctcggatttttggatccacttgctttgttcatgatcttactccaggtttagataaattgtgtgctcgtgcaattaaatgtgtcttt |
17725110 |
T |
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| Q |
303 |
ctaggctatacaagagttcaaaaaggatatcggtgctattgtccctccacacaccgcttctacatgtctgctga |
376 |
Q |
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| T |
17725111 |
ctaggctattcaagagttcaaaaaggatatcggtgctattgtccctccacacatcgcttctacatgtctgctga |
17725184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 238 - 369
Target Start/End: Complemental strand, 11025985 - 11025854
Alignment:
| Q |
238 |
gctttgttcatgatcttactccaggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctatacaagagttcaaaaaggatatcggtg |
337 |
Q |
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||||| ||||||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||| || || |||||||| | ||||||||| ||| |
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| T |
11025985 |
gctttattcatgatcttactcaaggtttagataaaatgtttgctcgtgcagttaaatgtgtctttctcagcgattcaagagtttagaaaggatataagtg |
11025886 |
T |
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| Q |
338 |
ctattgtccctccacacaccgcttctacatgt |
369 |
Q |
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| T |
11025885 |
ctattgtccatcaacgcatagcttctacatgt |
11025854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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