View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_89 (Length: 366)
Name: NF7829A_low_89
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_89 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 4751246 - 4751601
Alignment:
| Q |
11 |
attctagaacacaaaattgaacaccattatttgaaaacatagtttgtatgctatcttagccaagttttctttagtgaagaattctttcactggcgagtga |
110 |
Q |
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| T |
4751246 |
attctagaacacaaaattgaacaccattatttgaaaacatagtttgtatgctatcttagccaagttttctttagtgaagaattctttcactggcgagtga |
4751345 |
T |
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| Q |
111 |
ggacttccactgctaagttttctatatctccattttctctcttgaagcaaacaggagaaaacttcaatttcctcccagtttctcttgtatcaaacaatgt |
210 |
Q |
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| T |
4751346 |
ggacttccactgctaagttttctatatctccattttctctcttgaagcaaacaggagaaaacttcaatttcctcccagtttctcttgtatcaaacaatgt |
4751445 |
T |
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| Q |
211 |
gttagtgaataaaataaacatgcaagtcttaattgtgctatggattctaggcagcactaagcatcaaatggatccagaaagaaataagtatcactgtggt |
310 |
Q |
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| T |
4751446 |
gttagtgaataaaataaacatgcaagtcttaattgtgctatggattctaggcagcactaagcatcaaatggatccagaaagaaataagtatcaccgtggt |
4751545 |
T |
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| Q |
311 |
ttgttctaacataatgtcttaaatttttatcatttccaagtaccacaaagcaccgc |
366 |
Q |
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| T |
4751546 |
ttgttctaacgtaatgtcttaaatttttatcatttccaagtaccacaaagcaccgc |
4751601 |
T |
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