View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_9 (Length: 565)
Name: NF7829A_low_9
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 21 - 555
Target Start/End: Original strand, 42170898 - 42171432
Alignment:
| Q |
21 |
aattgctaggcttgacactatgatgagggttcaaacatggacatttcacttgtatatgtgtgagtttataatagttttgttatttcgtcgtctatctaaa |
120 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42170898 |
aattgctaggcttgacactatgatcagggttcaaacctggacatttcacttatatatgtgtgagtttataatagttttgttatttcgtcgtctatctaaa |
42170997 |
T |
|
| Q |
121 |
aagaaaactactcttttcccattcaattttgctcatttccacttcaaactcccgaaaataaccccaacgtaagttagcttgcgttcggtgtatccaacgt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42170998 |
aagaaaactactcttttcccattcaattttgctcatttccacttcaaactcccgaaaataaccccaacgtaagttagcttgcgttcggtgtatccaacat |
42171097 |
T |
|
| Q |
221 |
gactacgtgagttaactcacgttcacgttgaatatcagcgtgaattaacgctcgctgtaccccaacatgagttaactcaccttgggttgcattcaaacat |
320 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42171098 |
gactacgtgagttaactcacgttcacgttgaatattagcgtgaattaacgttcgctgaaccccaacatgagttaactcaccttggattgcattcaaacat |
42171197 |
T |
|
| Q |
321 |
attacataaaggcaatgttttttgtgtgagttgatcagacatcaccaattttcaatattgctgttcaggtgaagacttctttttcaattttccttctgtt |
420 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42171198 |
attacataaaggcaatgttttttgtgtgagttaatcatacatcaccaattttcaatattgctgttcaggtgaagacttctttttcaattttccttctgtt |
42171297 |
T |
|
| Q |
421 |
ctattcaaaggagattatcataacatgcatttgatacattactatgttgactgttgactaattcaaatgtaccacacactgtatcttcccacatgacact |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42171298 |
ctattcaaaggagattatcataacatgcatttgatacattactatgttgactgttgactaattcaaatgtaccacacactgtatcttcccacatgacact |
42171397 |
T |
|
| Q |
521 |
attgatgctccctctgtagtatttctttgtctctg |
555 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
42171398 |
attgatgctccctctgtagtatttctttgtctctg |
42171432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 339 - 555
Target Start/End: Original strand, 10011863 - 10012072
Alignment:
| Q |
339 |
tttttgtgtgagttgatcagacatcaccaattttcaatattgctgttcaggtgaagacttctttttcaattttccttctgttctattcaaaggagattat |
438 |
Q |
| |
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|||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||| |
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| T |
10011863 |
tttttgtgtgagttaatcatacattaccaattttcaatattgctgttcaggtgaagacttctttttcaaatttccttctattctattcaaagaagattat |
10011962 |
T |
|
| Q |
439 |
cataacatgcatttgatacattactatgttgactgttgactaattcaaatgtaccacacactgtatcttcccacatgacactattgatgctccctctgta |
538 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||| ||| || |
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| T |
10011963 |
cataacatgcttttgatacattacta-------tgttgactaattcaaatgaaccatacactgtgtcttcccacatgacactattgatgcttccttagtg |
10012055 |
T |
|
| Q |
539 |
gtatttctttgtctctg |
555 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
10012056 |
gtatttctttgtctctg |
10012072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 42171923 - 42171866
Alignment:
| Q |
133 |
cttttcccattcaattttgctcatttccacttcaaactcccgaaaataaccccaacgt |
190 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| | || ||||||| | |||||| |
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|
| T |
42171923 |
cttttcccattcaattttgctcattcccacctcaaatttcctaaaataatctcaacgt |
42171866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 12221185 - 12221153
Alignment:
| Q |
77 |
tgtgtgagtttataatagttttgttatttcgtc |
109 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |
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| T |
12221185 |
tgtgtgagtttataatagttttgtcatttcgtc |
12221153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 39309790 - 39309847
Alignment:
| Q |
354 |
atcagacatcaccaattttcaatattgctgttcaggtgaagacttctttttcaatttt |
411 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
39309790 |
atcatacatcaccaattttcaatattactgttcaggtgaagacttgtttttcaatttt |
39309847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 2706169 - 2706124
Alignment:
| Q |
77 |
tgtgtgagtttataatagttttgttatttcgtcgtctatctaaaaa |
122 |
Q |
| |
|
||||||| |||||||| | ||||| ||||||||||||||||||||| |
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|
| T |
2706169 |
tgtgtgaatttataatggctttgtcatttcgtcgtctatctaaaaa |
2706124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 39149721 - 39149656
Alignment:
| Q |
252 |
atatcagcgtgaattaacgctcgctgtaccccaacatgagttaactcaccttgggttgcattcaaa |
317 |
Q |
| |
|
|||||||||||| ||||||| ||||| | | ||||| | ||||||||| |||||||||||||||| |
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| T |
39149721 |
atatcagcgtgagttaacgcacgctgaattctaacataaattaactcacgttgggttgcattcaaa |
39149656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 7179340 - 7179308
Alignment:
| Q |
77 |
tgtgtgagtttataatagttttgttatttcgtc |
109 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
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|
| T |
7179340 |
tgtgtgagtttataatagttttgtcatttcgtc |
7179308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 49652111 - 49652075
Alignment:
| Q |
73 |
tatatgtgtgagtttataatagttttgttatttcgtc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
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| T |
49652111 |
tatatgtgtgagtttataatagttttgtcatttcgtc |
49652075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 33687270 - 33687340
Alignment:
| Q |
229 |
gagttaactcacgttcacgttgaatatcagcgtgaattaacgctcgctgtaccccaacatgagttaactca |
299 |
Q |
| |
|
|||| |||||| ||| ||| || |||||| ||||| |||| |||||| | ||||||||||||||||||||| |
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| T |
33687270 |
gagtaaactcatgtttacgctggatatcatcgtgagttaatgctcgccgaaccccaacatgagttaactca |
33687340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 14088828 - 14088880
Alignment:
| Q |
131 |
ctcttttcccattcaattttgctcatttccacttcaaactcccgaaaataacc |
183 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| ||||||| || ||||||||| |
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|
| T |
14088828 |
ctcttctcccagacaattttgctcatttccacctcaaacttcctaaaataacc |
14088880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 39284614 - 39284582
Alignment:
| Q |
77 |
tgtgtgagtttataatagttttgttatttcgtc |
109 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
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| T |
39284614 |
tgtgtgagtttataatagttttgtcatttcgtc |
39284582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 35058895 - 35058863
Alignment:
| Q |
77 |
tgtgtgagtttataatagttttgttatttcgtc |
109 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
35058895 |
tgtgtgagtttataatagttttgctatttcgtc |
35058863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 44604860 - 44604828
Alignment:
| Q |
77 |
tgtgtgagtttataatagttttgttatttcgtc |
109 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
44604860 |
tgtgtgagtttataatagttttgtcatttcgtc |
44604828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 32533916 - 32533948
Alignment:
| Q |
77 |
tgtgtgagtttataatagttttgttatttcgtc |
109 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
32533916 |
tgtgtgagtttataatagttttgtcatttcgtc |
32533948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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