View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_94 (Length: 363)
Name: NF7829A_low_94
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_94 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 47792895 - 47793132
Alignment:
| Q |
1 |
tccaaagagataacaagaacagggggcaagtaagaaaccctgtcttacatatatggcttgctagattaaaactatagatggtctggaaggttcctggttt |
100 |
Q |
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| T |
47792895 |
tccaaagagataacaagaacagggggcaggtaagaaaccctgtcttacatatatggcttgctagattaaaactatagatggtctggaaggttcctggttt |
47792994 |
T |
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| Q |
101 |
aggtaatttctgtgagtttagtgtgtacctttctcatccccgctataatgggttagagaatgcaatcaatttacaagaatgactaatgctgaataaatct |
200 |
Q |
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| T |
47792995 |
aggtaatttctgtgagtttagtgtgtacctttctcatccccactataatgggttagagaatgcaatcaatttacaagaatgactaatgctgaataaatct |
47793094 |
T |
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| Q |
201 |
gaactccatacgcttaaattaatctacatacatacatg |
238 |
Q |
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| T |
47793095 |
gaactccatactcttaaattaatctacatacatacatg |
47793132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 230 - 342
Target Start/End: Original strand, 47793167 - 47793279
Alignment:
| Q |
230 |
acatacatggaaatactcgaatatcaactgattgtcatgaaatctgacagccttttctttaacttttatgatgtacacattagtctatacttctaagttg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47793167 |
acatacatggaaatactcgaatatcaactgattgtcatgaaatctgacagccttttctttaacttttatgatgtacacattagtctatacttctaagttg |
47793266 |
T |
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| Q |
330 |
ttagactgttgtg |
342 |
Q |
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| T |
47793267 |
ttagactgctgtg |
47793279 |
T |
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