View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_99 (Length: 361)
Name: NF7829A_low_99
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_99 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 21 - 361
Target Start/End: Complemental strand, 52164164 - 52163824
Alignment:
| Q |
21 |
acaacattttatatgaacatgaccctcgtattgaaaaatttgggttaaatatacttgaatcacacagcactaaattattagatccttgaatcttgttaat |
120 |
Q |
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| T |
52164164 |
acaacattttatatgaacatgaccctcgtattgaaaaatttgggttaaatatacttgaatcacacagcactaaattattagatccttgaatcttgttaat |
52164065 |
T |
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| Q |
121 |
aaatggttggagtgtagattacctacttgcgaatccattgtttattgtctatttagtccaatatataccttatttttaataatggnnnnnnnaagtgttg |
220 |
Q |
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| T |
52164064 |
aaatggttggagtgtagattacctacttgcgaatccattgtttattgtctatttagtccaatatataccttatttttaataatggtttttttaagtgttg |
52163965 |
T |
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| Q |
221 |
tgtgagtcatttgtgatgttttaatatttggatgtggtttgtctacaaaatttattatcttcctttttctttgaacaagtggtatatattggactgacta |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52163964 |
tgtgagtcatttgtgatgttttaatatttggatgtggtttgtctacaaaatttattatcttcctttttctttgaacaagtggtatatattggactaacta |
52163865 |
T |
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| Q |
321 |
ataaacattttcaacacgaggttcatataaaattgtgttga |
361 |
Q |
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| T |
52163864 |
ataaacattttcaacacgagggtcatataaaattgtgttga |
52163824 |
T |
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