View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829_low_2 (Length: 390)
Name: NF7829_low_2
Description: NF7829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 52578598 - 52578935
Alignment:
| Q |
19 |
catcagaaaatgacacaatattggttacgcgtggatcatttgtttgaagataaacctcttgaaatacactnnnnnnntcaaccccaacaaacgttctctg |
118 |
Q |
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| T |
52578598 |
catcagaaaatgacacaatattggttacgcgtggatcatttgtttgaagataaacctcttgaaatacactaaaaaaatcaaccccaacaaacgttctctg |
52578697 |
T |
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| Q |
119 |
aaagagcaatatagaataccatattgagagtcatatgatatgatgattaagcatgtgttgaactattgaacaggtgagtgatccttgttgtgttagatag |
218 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578698 |
aaagagcaatatagaataccatattgag---------------tcattaagcatgtgttgaactattgaacaggtgagtgatccttgttgtgttagatag |
52578782 |
T |
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| Q |
219 |
gtattatcaagttggaagtatatttctaaatttatagatgagaaaaatagtatatgcagctttccattagagatttacttttcagtgacataataataac |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578783 |
gtattatcaagttggaagtatatttctaaatttatagatgagaaacatagtatatgcagctttccattagagatttacttttcagtgacataataataac |
52578882 |
T |
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| Q |
319 |
aacctgaatgggtgatgctgttccaggtcttgtagtgaaaatgagctgccatc |
371 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52578883 |
aacctgaatgggtgatgctgttccaggtcttgtggtgaaaatgagctgccatc |
52578935 |
T |
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