View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829_low_3 (Length: 306)
Name: NF7829_low_3
Description: NF7829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 47070136 - 47070416
Alignment:
| Q |
16 |
attcgatatttgtcactattaatcatgtaagaaaaaccaactaacagtgaaaaaacaacttgaataggatctgactgagtgactgtgagaaaggcattaa |
115 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47070136 |
attcgatttttgtcactattaatcaggtaagaaaaaccaactaacagtgaaaaaacaacttgaataggatctgactgagtgactgtgagaaaggcattaa |
47070235 |
T |
|
| Q |
116 |
gtttgcggtacaatttcgaatctttacaaaaagaattttccactaatggtgatattaagtttctgaggta----attcactatgcgacctttggttgaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47070236 |
gtttgcggtacaatttcgaatctttacaaaaagaattttccactaatggtgatattaagtttctgaggtacactattcactatgcgacctttggttgaaa |
47070335 |
T |
|
| Q |
212 |
aggtttaatgagaaaaggaac-aaatgacctctaatatattgtatatatgtgtgtgtgggtcatcaatctcaagtgtgttg |
291 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47070336 |
aggtttaatgagaaaaggaacaaaatgacctctaatatattgtatatatgtgtgtgtgggtcattaatctcaagtgtgttg |
47070416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University