View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829_low_4 (Length: 266)

Name: NF7829_low_4
Description: NF7829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829_low_4
NF7829_low_4
[»] chr1 (4 HSPs)
chr1 (16-248)||(29514554-29514794)
chr1 (163-248)||(43997939-43998022)
chr1 (163-248)||(43626258-43626342)
chr1 (16-44)||(43997872-43997900)
[»] chr3 (2 HSPs)
chr3 (18-248)||(206505-206744)
chr3 (20-248)||(202356-202592)
[»] chr4 (4 HSPs)
chr4 (20-248)||(44924368-44924603)
chr4 (20-248)||(6908395-6908630)
chr4 (18-155)||(6901694-6901832)
chr4 (201-248)||(6901645-6901692)
[»] chr7 (1 HSPs)
chr7 (93-248)||(24652872-24653035)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 29514794 - 29514554
Alignment:
Q  16 atatgcaaaatcaaactgctaaataatatactcatacaaacaccattaagtaaaaggttcaattatccgaaagatcatcaaatgtattggagcaaaactc 115  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  29514794 atatgcaaaatcaaactgctaaataatatactcatacaaactccattaagtaaaaggttcaattatcataaagatcatcaaatgtattggagcaaaactc 29514695  T
Q  116 tatacttggaaaagaaaagctcaaaaagaacatctctcgagcaa--------tcgcacaataaacaaggataggaaaatggtaaaagttatatgcatgat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||| |||||||||||    
T  29514694 tatacttggaaaagaaaagctcaaaaagaacatctctcgagcaaagatttactcgcacaataaacaaggataggaaaatggtaaaagtcatatgcatgat 29514595  T
Q  208 agaaaatctaaagtctaggacagatatcaaaaggctagagc 248  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  29514594 agaaaatctaaagtctaggacagatatcaagaggctagagc 29514554  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 43997939 - 43998022
Alignment:
Q  163 cacaataaacaaggataggaaaatggtaaaagttatatgcatgatagaaaatctaaagtctaggacagatatcaaaaggctagagc 248  Q
    |||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| ||  |||||||||||||    
T  43997939 cacaataaacaaggatgggaaaatggtaaaagtcatatgcatcatagaaaatctaaagtctaggacagcta--aaaaggctagagc 43998022  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 43626342 - 43626258
Alignment:
Q  163 cacaataaacaaggat-aggaaaatggtaaaagttatatgcatgatagaaaatctaaagtctaggacagatatcaaaaggctagagc 248  Q
    |||||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  43626342 cacaataaacaaggatgagaaaaatggtaaaagtcatatgcatcatagaaaatctaaagtctaggacagata--aaaaggctagagc 43626258  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 43997872 - 43997900
Alignment:
Q  16 atatgcaaaatcaaactgctaaataatat 44  Q
    |||||||||||||||||||||||||||||    
T  43997872 atatgcaaaatcaaactgctaaataatat 43997900  T

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Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 206505 - 206744
Alignment:
Q  18 atgcaaaatcaaactgctaaataatatactcatacaaacaccattaagtaaaaggttcaattatccgaaagatca-tcaaatgtattggagcaaaactct 116  Q
    |||||| |||||||||||||||||||| ||| |||| ||||||| |||||||||||||||||||   |||||||| | ||||||||||||||||||||      
T  206505 atgcaatatcaaactgctaaataatattctcttacacacaccatcaagtaaaaggttcaattataacaaagatcatttaaatgtattggagcaaaactta 206604  T
Q  117 atacttggaaaagaaaagctcaaaaagaacatctctcgagcaa--------tcgcacaataaacaaggataggaaaatggtaaaagttatatgcatgata 208  Q
    |||||||||||||||||| ||||||| ||||| |||| |||||        || ||||||||||| |||| |||||| ||||||||| || |||||||||    
T  206605 atacttggaaaagaaaagatcaaaaacaacatgtctcaagcaaagatttcctcacacaataaacagggatgggaaaacggtaaaagtcatttgcatgata 206704  T
Q  209 gaaaatctaaagtctaggacagatatcaaaaggctagagc 248  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  206705 gaaaatctaaagtctaggacagatataaaaaggctagagc 206744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 202592 - 202356
Alignment:
Q  20 gcaaaatcaaactgctaaataatatactcatacaaacaccattaagtaaaaggttcaattatccgaaagatcatcaaatgtattggagcaaaactctata 119  Q
    |||| ||||||| |||||||||||| ||| |||| | | ||| |||||||||||||||| |||  ||||||||||||||||||||||||||||||  |||    
T  202592 gcaatatcaaacagctaaataatattctcttacacagagcatcaagtaaaaggttcaatcatcacaaagatcatcaaatgtattggagcaaaacttaata 202493  T
Q  120 cttggaaaagaaaagctcaaaaagaacatctctcgagcaa--------tcgcacaataaacaaggataggaaaatggtaaaagttatatgcatgatagaa 211  Q
    ||| ||||||||||| ||||||| ||||| ||||||||||        || ||||||||||| |||| |||||||||||||||| || ||||||| ||||    
T  202492 cttagaaaagaaaagatcaaaaacaacatgtctcgagcaaagatttcctcacacaataaacagggatgggaaaatggtaaaagtcatttgcatgacagaa 202393  T
Q  212 aatctaaagtctaggacagatatcaaaaggctagagc 248  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  202392 aatctaaagtctagggcagatataaaaaggctagagc 202356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 44924368 - 44924603
Alignment:
Q  20 gcaaaatcaaactgctaaataatatactcatacaaacaccattaagtaaaaggttcaattatccgaaagatcatcaaatgtattggagcaaaactctata 119  Q
    |||| ||||||| |||||||||||| ||| ||||  || ||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||  |||    
T  44924368 gcaatatcaaacagctaaataatattctcttacacgcagcatcaagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaaacttaata 44924467  T
Q  120 cttggaaaagaaaagctcaaaaagaacatctctcgagcaa--------tcgcacaataaacaaggataggaaaatggtaaaagttatatgcatgatagaa 211  Q
    ||| ||||||||| | | ||||| ||||| ||||||||||        || ||||||||||| |||| |||||||||||||||| || ||||||||||||    
T  44924468 cttagaaaagaaaggataaaaaacaacatgtctcgagcaaagatttcctcacacaataaacagggat-ggaaaatggtaaaagtcatttgcatgatagaa 44924566  T
Q  212 aatctaaagtctaggacagatatcaaaaggctagagc 248  Q
    ||||||||||||||||||||||| |||||||||||||    
T  44924567 aatctaaagtctaggacagatataaaaaggctagagc 44924603  T

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Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 6908395 - 6908630
Alignment:
Q  20 gcaaaatcaaactgctaaataatatactcatacaaacaccattaagtaaaaggttcaattatccgaaagatcatcaaatgtattggagcaaaactctata 119  Q
    |||| ||||||| |||||||||||| ||| |||| ||| ||| |||||||| |||||||||||  ||||||||||||||||||||||||||||||  |||    
T  6908395 gcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaagttcaattatcacaaagatcatcaaatgtattggagcaaaact-aata 6908493  T
Q  120 cttggaaaagaaaagctcaaaaagaacatctctcgagcaa--------tcgcacaataaacaaggataggaaaatggtaaaagttatatgcatgatagaa 211  Q
    ||| ||||||||||| ||||||| ||||| ||| ||||||        || ||||||||||| |||| |||||||||||||||| || ||||||| ||||    
T  6908494 cttagaaaagaaaagatcaaaaacaacatgtcttgagcaaagatttcctcacacaataaacagggatgggaaaatggtaaaagtcatttgcatgacagaa 6908593  T
Q  212 aatctaaagtctaggacagatatcaaaaggctagagc 248  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  6908594 aatctaaagtctagggcagatataaaaaggctagagc 6908630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 6901832 - 6901694
Alignment:
Q  18 atgcaaaatcaaactgctaaataatatactcatacaaacaccattaagtaaaaggttcaattatccgaaagatcat-caaatgtattggagcaaaactct 116  Q
    |||||| |||||||||||||||||||| ||| |||| ||||||| | |||||||||||||||||   |||||| || |||||||||||||||||||||      
T  6901832 atgcaatatcaaactgctaaataatattctcttacacacaccatcaggtaaaaggttcaattataacaaagataattcaaatgtattggagcaaaactta 6901733  T
Q  117 atacttggaaaagaaaagctcaaaaagaacatctctcga 155  Q
    |||||||||||||||||| ||||||| ||||| ||||||    
T  6901732 atacttggaaaagaaaagatcaaaaacaacatgtctcga 6901694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 6901692 - 6901645
Alignment:
Q  201 gcatgatagaaaatctaaagtctaggacagatatcaaaaggctagagc 248  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||    
T  6901692 gcatgatagaaaatctaaagtctaggacagatataaaaaggcgagagc 6901645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 93 - 248
Target Start/End: Complemental strand, 24653035 - 24652872
Alignment:
Q  93 tcaaatgtattggagcaaaactctatacttggaaaagaaaagctcaaaaagaacatctctcgagcaa--------tcgcacaataaacaaggataggaaa 184  Q
    ||||||||||||||||||||||  |||||||||||||||||| ||||||| ||||| | | ||||||        || ||||||||||| |||| |||||    
T  24653035 tcaaatgtattggagcaaaacttaatacttggaaaagaaaagatcaaaaacaacatgttttgagcaaagatttcctcacacaataaacagggatgggaaa 24652936  T
Q  185 atggtaaaagttatatgcatgatagaaaatctaaagtctaggacagatatcaaaaggctagagc 248  Q
    | ||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24652935 acggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctagagc 24652872  T

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