View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7830_high_2 (Length: 337)
Name: NF7830_high_2
Description: NF7830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7830_high_2 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 75 - 323
Target Start/End: Complemental strand, 177287 - 177039
Alignment:
| Q |
75 |
agctccttctcactacctacttcaacatcatcctcctcgagaccaaactcttcaacaaccctccgctccacttcaatgtcacctcctacacccgtactaa |
174 |
Q |
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| T |
177287 |
agctccttctcactacctacttcaacatcatcctcctcgagatcaaactcttcaacaaccctccgctccacttcaatgtcacctcctacacccgtactaa |
177188 |
T |
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| Q |
175 |
ttaccttaccactccttgttgttatggctttgcaatgctctttcccttttgggttgtcttgagtgttggcggtgaacgctcctccttgttggttggcttg |
274 |
Q |
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| T |
177187 |
ttaccttaccactccttgttgttatggctttgcaatgctctttcccttttgggttgtcttgagtgttggcggtgaacgctcctccttgttggttggcttg |
177088 |
T |
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| Q |
275 |
agacatgtgttgagccatttgacccacttgtgtttcaaggtttttgatg |
323 |
Q |
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| T |
177087 |
agacatgtgttgagccatttgacccacttgtgtttcaaggtttttgatg |
177039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 78 - 313
Target Start/End: Complemental strand, 20170872 - 20170643
Alignment:
| Q |
78 |
tccttctcactacctacttcaacatcatcctcctcgagaccaaactcttcaacaaccctccgctccacttcaatgtcacctcctacacccgtactaatta |
177 |
Q |
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| T |
20170872 |
tccttctcactacctacctcatcaccatccttatcgatatcaaagtcttcaacaaccttctgctccacttcaatgtcatcgcctacacctttaccaatta |
20170773 |
T |
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| Q |
178 |
ccttaccactccttgttgttatggctttgcaatgctctttcccttttgggttgtcttgagtgttggcggtgaacgctcctccttgttggttggcttgaga |
277 |
Q |
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| T |
20170772 |
ccttaccactccttgttgttatggctttgcactgtt------cttttgaattggcttgtgtgttggtggtgaacgctcctccttgttgggtgacttgagc |
20170679 |
T |
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| Q |
278 |
catgtgttgagccatttgacccacttgtgtttcaag |
313 |
Q |
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| T |
20170678 |
taattgttgatccatttgacccatttgtgtctcaag |
20170643 |
T |
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