View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7830_low_1 (Length: 492)
Name: NF7830_low_1
Description: NF7830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7830_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Original strand, 3659404 - 3659853
Alignment:
| Q |
19 |
aaccaaatgccaattagacacacagatgagatctaccaattaccaaacaatctaagtccaatcaaattctcctagaatacaatcaaacattacaaatcaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
3659404 |
aaccaaatgccaattagacacacagatgagatctaccaattaccaaacaatctaagtccaatcaaattgtcctagaatccaatcaaacattacaaatcaa |
3659503 |
T |
|
| Q |
119 |
agggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgcctttactcttcaaatcagttctgctttccattttaagtg |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659504 |
agggtagacaaagccttacatgaatataatgtaatgacatttcacgtcaaaattttcacgcctttactcttcaaatcagttctgctttccattttaagtg |
3659603 |
T |
|
| Q |
219 |
gcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctccgtcatcgctactacgtgttgatcctccactgtcctc |
318 |
Q |
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| T |
3659604 |
gcaatggagcagagaacagaatcttctcttggtgtgc---------------cactatatctccgtcatcgctactacgtgttgatcctccactgtcccc |
3659688 |
T |
|
| Q |
319 |
caccagcacttcctcgtcatcttcaacaccctgataagagtccacaacatctacaactgcaaactttctattctccaaaacctcgccttggtcatcattt |
418 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659689 |
caccagcacttcctcgtcatcttcaacaccctgagaagagtccacaacatctacaactgcaaactttctattctccaaaacctcgccttggtcatcattt |
3659788 |
T |
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| Q |
419 |
gaggaacttccatctgattcacaagttcttgtgctataaacctcacaaacattaccattctctgc |
483 |
Q |
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| T |
3659789 |
gaggaacttccatccgattcacaagttcttgtgctataaacctcacaaacattaccattctctgc |
3659853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 3653138 - 3653449
Alignment:
| Q |
17 |
agaaccaaatgccaattagacacacagatgagatctaccaattaccaaacaatctaagtccaatcaaattctcctagaatacaatcaaacattacaaatc |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
3653138 |
agaaccaaatgccaattagacacgcagatgagatctaccagttaccaaacaatctaagtccagtcaaattctcctagaata--atcaaacattacaaatc |
3653235 |
T |
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| Q |
117 |
aaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgcctttactcttcaaatcagttctgctttccattttaag |
216 |
Q |
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| T |
3653236 |
aaagggtaaacaaaaccttacatgaatataatgtaacgacatttcacgtcaaaagtttcacgcctttactcttcaaatcagttctgctttccattttaag |
3653335 |
T |
|
| Q |
217 |
tggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctccgtcatcgctactacgtgttgatcctccactgtcc |
316 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3653336 |
cggcagtggagcagagaacagaatcttctcttggtgtgcttgaaactactctttcactatatctccgtcatcgctactacgtgttgatcctccactgtcc |
3653435 |
T |
|
| Q |
317 |
tccaccagcacttc |
330 |
Q |
| |
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|||||||| ||||| |
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| T |
3653436 |
tccaccagaacttc |
3653449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 73 - 330
Target Start/End: Original strand, 3657199 - 3657452
Alignment:
| Q |
73 |
agtccaatcaaattctcctagaatacaatcaaacattacaaatcaaagggtag---acaaagccttacatgaatataatgtaacgacatttcacgtcaaa |
169 |
Q |
| |
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||||||||||| ||||||||||||||| ||||||||||||||||||| | | ||||||||||| |||| |||| | | |||||||| || |||| |
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| T |
3657199 |
agtccaatcaagttctcctagaatacagtcaaacattacaaatcaaatgtaaacaaacaaagccttaaatga---taattttatgacatttcgcgacaaa |
3657295 |
T |
|
| Q |
170 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctt |
269 |
Q |
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| ||||| || ||||||||||| || |||| ||||||||||| ||||||| ||| |||||||||| |||||| || ||| | ||||||||||||| |
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| T |
3657296 |
ttgttcacaccattactcttcaagtct----tgctctccattttaagcggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctt |
3657391 |
T |
|
| Q |
270 |
tcactatatctccgtcatcgctactacgtgttgatcctccactgtcctccaccagcacttc |
330 |
Q |
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||| | |||||| | | | || ||||| ||||||||| ||| |||||||||||||||||| |
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| T |
3657392 |
tcagtcaatctccataaccactgctacgcgttgatccttcaccgtcctccaccagcacttc |
3657452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 170 - 311
Target Start/End: Original strand, 3649181 - 3649322
Alignment:
| Q |
170 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctt |
269 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| |||||||||||| || | |||| ||||| |||||| || ||| | |||||||| |||| |
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| T |
3649181 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctt |
3649280 |
T |
|
| Q |
270 |
tcactatatctccgtcatcgctactacgtgttgatcctccac |
311 |
Q |
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||||| |||||| | | | |||||||| ||||||||||||| |
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| T |
3649281 |
tcactcaatctccataaccactactacgcgttgatcctccac |
3649322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 36164576 - 36164634
Alignment:
| Q |
170 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagc |
228 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
36164576 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagcggcaatggagc |
36164634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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