View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7830_low_2 (Length: 379)
Name: NF7830_low_2
Description: NF7830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7830_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 362
Target Start/End: Original strand, 8507220 - 8507571
Alignment:
| Q |
10 |
aagaatatattatgagatggtttaaaaggtaaatcgaccaatgaacatattaaccccactattgcactagctagtgaacttgtagtattctataatatnn |
109 |
Q |
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| T |
8507220 |
aagaatatattatgagatggtttaaaaggtaaatcgaccaatgaacatattaaccccactattgcactagctagtgaacttgtagtattctataatataa |
8507319 |
T |
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| Q |
110 |
nnnnnggttctttattttctttttatctaaattgaagcaactaaaaatagaagttggatgaactaatatgttgtgacacaatttgtagannnnnnnnnng |
209 |
Q |
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| T |
8507320 |
aaaa-ggttctttattttctttttatctaaattgaagcaactaaaaatagaagttgaatgaactaatatgttgtgacagaatttgtagattttttttttg |
8507418 |
T |
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| Q |
210 |
aaacaatagataacgagttcttaaacacgctttttgataagtgggtatagaagaacatctgttaagaaaggtaggtctcttaaatcaatcttaatatctc |
309 |
Q |
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||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| |
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| T |
8507419 |
aaacaatagataatgagtccttaaacacgttttttgataagtgcgtatagaagaacacctattaagaaaggtagatctcttaaatcaatcttaatatctc |
8507518 |
T |
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| Q |
310 |
aatgattagtctttaactttcgattaagtgatactttggacaaccaataaaaa |
362 |
Q |
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| T |
8507519 |
aatgattagtctttaactttcgattaagtgatactttggacaaccaataaaaa |
8507571 |
T |
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